LOCUS       XM_006240668            5403 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphofurin acidic cluster sorting
            protein 2 (Pacs2), transcript variant X1, mRNA.
ACCESSION   XM_006240668
VERSION     XM_006240668.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006240668.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006240668.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5403
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5403
                     /gene="Pacs2"
                     /note="phosphofurin acidic cluster sorting protein 2;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 60 ESTs, 7 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 46 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:691631"
                     /db_xref="RGD:1597262"
     CDS             106..2814
                     /gene="Pacs2"
                     /codon_start=1
                     /product="phosphofurin acidic cluster sorting protein 2
                     isoform X1"
                     /protein_id="XP_006240730.1"
                     /db_xref="GeneID:691631"
                     /db_xref="RGD:1597262"
                     /translation="MAERGRLGLPGAPGALNTPVPMNLFATWEVDGSSPSCVPRLCSL
                     TLKKLAVLRELEKELLSVVIAVKMQGSKRVLRSHEIVLPPSGQVETDLALTFSLQYPH
                     FLKREGNKLQIMLQRRKRYKNRTILGYKTLAAGSINMAEVMQHPSEGGQVLSLCSSIK
                     EASVKVAEIWIVSLSSQPIDHEDSAMQAGPKAKSTDNYSEEEYESFSSEQEASDDAVQ
                     GQDLDEDDFDVGKPKKQRRSIVRTTSMTRQQNFKQKVVALLRRFKVSEEVLDSEQDPA
                     EHVPEAEEDLDLLYDTLDVENPSDSGPDMDDDDSVLSTPKPKLRPYFEGLSHSSSQTE
                     IGSIHSARSHREPPSPADVPEKTRSLGGKQPSDSISDTVALSMPVPREPPGQPEESPE
                     AETSTLDVFTEKLPPSGRIIKTESLVIPSTRSESKPAGRRGRSTSLKERQAARPQNER
                     ANSLDNERCPDTRSQLQIPRKTVYDQLNHILISDDQLPENIILVNTSDWQGQFLSDVL
                     QKHTLPVVCTCSAADVQAAFSTIVSRIQRYCNCNSQPPTPVKIAVAGAQHYLSAILRL
                     FVEQLSHKTPDWLGYMRFLIIPLGSHPVARYLGSVDYRYNNFFQDLAWRDLFNKLEAQ
                     SSVQDTPDIVSRITQYISGANCAHQLPIAEAMLTYKQKRKKHFHFDFTLSPDEESSQR
                     FIPFVGVVKVGIVEPSSATSGDSDDAAPSGSSVLSSTPPSASTSPAAKEASPTPPSSP
                     SVSGGLSSPSQGVGAELMGLQVDYWTAAQPADRKRDVEKKDMPTTKNTLKCTFRSLQV
                     SRLPGSGEAAATPTMSMTVVTKEKNKKVMFLPKKTKDKDVESKSQCIEGISRLICTAK
                     HQQNMLRVLIDGVECSDVKFFQLAAQWSSHVKHFPICIFGHSKATF"
ORIGIN      
        1 ccatgtgacc gcgccgccgc cctccgcgcg cccggcccgc ccgcccgccg cgctcccgcg
       61 gcccggcgca gccccaggcc gccgagggac ggcggggccg gcgccatggc cgagcggggc
      121 cgcctcggcc tgcccggcgc gcccggagcg ctcaacactc cggtgcccat gaacctgttt
      181 gccacctggg aggtggacgg ctccagcccc agctgcgtgc ccaggttgtg tagcctgacc
      241 ctgaagaagc tggcagtgct ccgggaactg gaaaaggaac tcttgtccgt ggtgattgct
      301 gtcaagatgc agggttccaa acgtgtcctg agatcacatg agattgtgct gcctcccagt
      361 ggacaagtgg agaccgacct ggctctgacc ttctctcttc agtaccccca cttcctgaag
      421 agagaaggca acaagctaca gatcatgctg cagcgcagaa agcggtacaa gaacaggaca
      481 atcctgggct ataagacgct ggctgcaggt tctatcaaca tggctgaggt gatgcagcac
      541 ccctctgagg gtggccaggt tctgagcctc tgcagcagca tcaaagaggc ctctgtgaag
      601 gtggccgaga tctggatcgt ctccctgtcc agtcagccca ttgaccatga ggacagtgcg
      661 atgcaggctg gccccaaggc caagtccaca gataactact ctgaggagga gtatgagagc
      721 ttctcctctg agcaggaagc cagtgatgac gccgtacaag ggcaggatct tgacgaggat
      781 gactttgatg tgggaaaacc caagaagcag cggcgctcga tagtaagaac gacgtccatg
      841 accaggcaac agaacttcaa gcagaaggtg gtggcgctac tgcgcaggtt taaagtgtcg
      901 gaggaggtct tagattcgga gcaggacccc gcagaacatg ttcctgaggc agaggaggac
      961 ctggatcttc tctatgacac gctggacgtg gagaacccca gcgacagtgg ccctgacatg
     1021 gatgatgatg acagtgtcct tagcaccccc aagcccaagc tcaggcctta cttcgaaggc
     1081 ctgtcccact ccagctcaca gacagagata ggaagcatcc acagcgcccg gagccatagg
     1141 gagcctccaa gcccggctga tgtccctgag aagacaagat ccctgggagg caagcagccc
     1201 agcgacagca tttctgacac ggtggccctt agtatgccag tcccccggga accaccaggg
     1261 caacctgagg agagcccaga ggctgagacc tctaccttag atgtgttcac ggagaagctg
     1321 ccacccagtg gaagaatcat caagactgag tcacttgtca tcccctccac caggtcagag
     1381 tcaaagccag ctggccgccg gggccggagc acatccctga aggagcggca ggctgctcgt
     1441 ccccagaatg aacgggccaa cagcctagac aatgagcgct gtccagacac gaggagccag
     1501 ctgcagattc ccaggaaaac tgtgtatgac caactgaacc acatcctcat ctccgatgac
     1561 caactccctg agaatatcat tctcgtcaac acctctgact ggcagggaca gttcctctca
     1621 gatgtgctgc agaagcacac gcttcctgtg gtgtgcacgt gctctgctgc tgatgtgcag
     1681 gctgccttca gcaccattgt gtcccggata cagcgatact gcaactgcaa ttctcagcca
     1741 ccaacccctg tgaagatcgc tgtggcgggg gcacagcatt acctcagcgc catcctgcgg
     1801 ctcttcgtgg agcagctgtc tcacaagaca ccggactggc tcggctacat gcgcttcctc
     1861 atcatccccc tgggctccca ccctgtggcc aggtacctgg gctctgtgga ctaccgctac
     1921 aacaacttct tccaggatct ggcctggaga gacctgttca acaagctgga agcccagagc
     1981 agtgtgcagg acacaccaga catcgtgtca cgcatcaccc agtacatctc aggagccaac
     2041 tgtgctcacc agctccccat cgcagaggcc atgctcacct acaagcagaa gaggaaaaag
     2101 cattttcact ttgactttac cctgagccct gatgaagaat cctctcagcg gttcattcct
     2161 tttgtcgggg ttgtgaaggt tggaattgtg gaaccatctt cagccacgtc aggagactct
     2221 gatgacgcag ccccctcagg ctccagtgta ctctcgtcaa ccccaccgtc tgcatctaca
     2281 tctcctgcgg ccaaggaggc ttcgcctacc ccaccctcct ccccttcagt gagtggaggc
     2341 ctctcctccc ccagccaggg tgtcggcgct gagctcatgg ggctgcaggt ggactactgg
     2401 acagcggcac agcctgcgga caggaagaga gacgtggaga agaaggacat gcccaccacc
     2461 aaaaacacgc tcaagtgcac tttccggtcc ctccaggtca gcaggctgcc cggcagtggt
     2521 gaggctgcag ccacacccac catgtccatg accgtggtca ccaaggagaa gaacaagaag
     2581 gtgatgtttt tgcccaagaa aacgaaggac aaggatgtgg aatccaaaag ccagtgcatc
     2641 gaaggcatca gccggctgat ctgcacggct aagcaccaac agaacatgct tcgggtcctc
     2701 attgacggcg tggaatgcag cgatgtcaag ttcttccagc tggctgccca gtggtcttcc
     2761 cacgtgaagc acttccctat ctgcatcttt ggacactcca aggccacctt ctagccccac
     2821 ccatggaagg gctgacaccg gacagtggag ggacgtatgt cctgctctgt gtcagccact
     2881 gacggaagga cagctgtgtt tctgttaagg ttactacaga gacagactct taaaaacaca
     2941 aagaaacagt cttaagtatg aatgtgctca tagcccagct agctccctgt gggccactga
     3001 gtcccttggc tctgcttatt aaccagaata tgtggagagg ctggtaagaa aggaggggaa
     3061 ctctggtccc atgagacaga ccccagacca caagcaagaa gcgttcttgc tttgtatcct
     3121 gccctttgct gaagtgggga ggagggagca cagggagctt tggagtttag tggccagaag
     3181 ctgaaggtca gggcatgttt ggtctcctag catgagatgt cggtccctgg cacccatgcg
     3241 tggttcccaa taaactccag cctcatggcg gaggttttat agtagcagat ctttctaatg
     3301 ctctcatata catttgacaa cgtagctgcc aagcagatgt tgctcttgtg aagtcccctt
     3361 gtgtggggca gagccagcag gagctgcatt cccaccccta cccctgtggc tcccattcca
     3421 gaggcacctc caggcttctg tggatcctgc tgctcagatc aggcggtcct ttcaaatgtt
     3481 ccagtgtctg tcctgggaac gggaaacact tctggggttt gtctgagccc ttccctatat
     3541 tctgcttgct ggacagggac ttccaggact ggtcatgtgg gatctgagat gagaatcaag
     3601 gttgtgaact ggaaacaaac aaccagaggt ggtgtggtgt ggtgtggtgt ggtgtggtgt
     3661 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtggtgtc aatgaaggct
     3721 tcagcaggct agtctgatga caaaggccac ctccctcctc ccttacggga ctgagtctag
     3781 ccaagtcaag cttcttatag ccaccatttc ccccatccag caggagaggg gtgtgctggt
     3841 ggcctacagc aagggtcacc ctagctgtac gtgctccacc agactcatga aggggtcact
     3901 gcctcagtcc taactttctc acgaatcctt tctcccctgg gttgtctgat tagaagagtg
     3961 cctgttgccc tggaagctgg ggctctcttg gggaccctgg tggtccactt gggagcttta
     4021 aagcttggtg tctggacctt gagaccttcc caagagtatg ttcagaaaat tgccaagagc
     4081 aggacaggct gagtttgagg acccttcctg gagtgaaaga tggcgtgttt tttatttact
     4141 tacttcccct gccttgactt gccgaacagg gtctatttgt cctagataac aggaccccag
     4201 gacctgggta tagggcttct tagtggaatt cctggtgagg tatactctga aaagatcctg
     4261 tgttgggtca ggccactgta atccttggag tttaagaacc tagtttacct gccccttgag
     4321 gtttttccca aaggtcaacc ttcataggaa acatttggcc tgatttctag cctagaggcc
     4381 accagtgggt tcaagctttt gcctcagggc agtccctttt caggaccctc cctgtacttg
     4441 ccccttgatg ggttcctgga gcctcactac ctacatggga ggagggtgta ggcagggcct
     4501 ctgtccagca gcagccccgg gtggagtcag agaagcctag cacctgagca ccatacaccc
     4561 accacctacc tacccacaaa cctagacggc agtcctcccc acgcctcact tacccagttg
     4621 gttagagaga gatggtccat tttccttgcc tacctcatgg agctgtaatg aggattcctg
     4681 gagaagcact ttgtcccttg gaaggatgac accaaagccc ccatgacagg cagttgcagt
     4741 ggtaagaaca gcagagtgtg tttgcatccc aacaggcctt agctctgagg catcaccctt
     4801 agagcctgcc agtcttagag gtcactgtca ggcaatacca gttgccattg ctcattgccg
     4861 tcagttgggg gctctgcctc taccttcaag ttggttcctg cccccaccct ctgagtatgc
     4921 tcgctatcac tgtgtaggta ccagaggtgg gaggaactag ggggaggctc agccctcgtg
     4981 caatggcttg ccctagcctt atcctgcaag cctcacttcc tctagcctcc atctcaaatg
     5041 aattctgcat aaaaacatcc tggcacttct ccccagggcc agggtactgg accctcactt
     5101 gctccctaaa tctctacgcc cttcagagac tgctctgtcc tggaaggggg gccagcagag
     5161 gctgacagcc ttgcgtgagg atgactctgt ccgcttctgc agactgccca gcgcgctgtg
     5221 actgatttct agagtgtata tgtgttgcta gttttgtttt tgttttttaa taaaaagcaa
     5281 gattcatgta aatagctttt ttgggagcag atgctgatct gtcccatgcg accatgtgga
     5341 cgatttcaag gtgctgaagc gacactaata aactgacggc gctcgggccg cccactgctg
     5401 tga
//
