LOCUS       NM_001398926            1540 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus parkin coregulated like (Pacrgl), transcript
            variant 1, mRNA.
ACCESSION   NM_001398926 XM_341225
VERSION     NM_001398926.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000014.1.
            
            On Dec 28, 2021 this sequence version replaced XM_341225.9.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.54716.1,
                                           SRR26360194.1956479.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-126               JAXUCZ010000014.1  66769430-66769555   c
            127-194             JAXUCZ010000014.1  66767607-66767674   c
            195-346             JAXUCZ010000014.1  66767324-66767475   c
            347-414             JAXUCZ010000014.1  66765276-66765343   c
            415-505             JAXUCZ010000014.1  66763488-66763578   c
            506-640             JAXUCZ010000014.1  66761218-66761352   c
            641-748             JAXUCZ010000014.1  66760521-66760628   c
            749-829             JAXUCZ010000014.1  66758970-66759050   c
            830-1540            JAXUCZ010000014.1  66744625-66745335   c
FEATURES             Location/Qualifiers
     source          1..1540
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14q11"
     gene            1..1540
                     /gene="Pacrgl"
                     /gene_synonym="RGD1311045"
                     /note="parkin coregulated like"
                     /db_xref="GeneID:360947"
                     /db_xref="RGD:1311045"
     exon            1..126
                     /gene="Pacrgl"
                     /gene_synonym="RGD1311045"
                     /inference="alignment:Splign:2.1.0"
     exon            127..194
                     /gene="Pacrgl"
                     /gene_synonym="RGD1311045"
                     /inference="alignment:Splign:2.1.0"
     CDS             143..886
                     /gene="Pacrgl"
                     /gene_synonym="RGD1311045"
                     /note="PARK2 co-regulated-like"
                     /codon_start=1
                     /product="PACRG-like protein"
                     /protein_id="NP_001385855.1"
                     /db_xref="GeneID:360947"
                     /db_xref="RGD:1311045"
                     /translation="MQKSECSGGVQLRNRATGSNDRTSSSTQVKHRTAVQRSKSSSLT
                     SSPEAARRAHPRPSDKLNPKTINPFGEQPRAPSAFAAIYSQGGIPCRLVHGSVKHRLQ
                     WECQPETLPFDPLLITLAEGLRETKHPYTFVSKEGFRELLLVKDAPEKAIPLLPRLIP
                     VLKAALVHSADEVFERGLSALVQLSAVVGPSLNGHLKLLLTSLSKRLMDKKFKEPITS
                     ALQKLEQHGGSASLIIIKSKIPTYCSICS"
     exon            195..346
                     /gene="Pacrgl"
                     /gene_synonym="RGD1311045"
                     /inference="alignment:Splign:2.1.0"
     exon            347..414
                     /gene="Pacrgl"
                     /gene_synonym="RGD1311045"
                     /inference="alignment:Splign:2.1.0"
     exon            415..505
                     /gene="Pacrgl"
                     /gene_synonym="RGD1311045"
                     /inference="alignment:Splign:2.1.0"
     exon            506..640
                     /gene="Pacrgl"
                     /gene_synonym="RGD1311045"
                     /inference="alignment:Splign:2.1.0"
     exon            641..748
                     /gene="Pacrgl"
                     /gene_synonym="RGD1311045"
                     /inference="alignment:Splign:2.1.0"
     exon            749..829
                     /gene="Pacrgl"
                     /gene_synonym="RGD1311045"
                     /inference="alignment:Splign:2.1.0"
     exon            830..1540
                     /gene="Pacrgl"
                     /gene_synonym="RGD1311045"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgctacttg aacttggctt ctggaatcac cgctgccgga ggcgggaaca agtgggcttt
       61 ggtgcagaga gtccgagtga caccccacgt gggcggcggc aagcgccggt ggcggctgga
      121 gaggcggggt gaaagagaag ctatgcagaa atcagagtgc tctggaggtg tgcaattgag
      181 aaacagagca acaggtagta atgatcgcac atcctcaagc acacaggtga aacacaggac
      241 tgcagttcag cgcagcaaat cctcctcctt aaccagttct ccagaggctg ccagacgggc
      301 tcatcctcgg ccaagcgata aactcaaccc taaaaccatt aacccttttg gtgaacagcc
      361 acgggcccct tctgcatttg cagctattta ctctcaagga ggcattcctt gcagattggt
      421 acatggctca gtaaaacaca gattacagtg ggaatgccag cctgaaactc ttccatttga
      481 cccgcttcta attacattag ccgagggtct gagggagacc aagcatcctt atacctttgt
      541 gtcaaaggaa ggctttaggg agttacttct ggtcaaggat gctcctgaaa aagctatccc
      601 tttgctacct cgactgatcc ctgtgttgaa ggcagctcta gttcactctg ctgatgaagt
      661 gtttgaaaga ggactgagcg ctctcgtgca actgagtgcg gttgttggcc cgtctctgaa
      721 tggccatctg aaactactgc ttacaagtct ttcgaagagg ctaatggaca aaaaattcaa
      781 agagcccatc accagtgctt tacaaaagct ggagcagcac ggcggaagtg caagtcttat
      841 catcatcaaa tccaaaatcc caacatactg ctctatctgc tcttgagcaa gggaggcaac
      901 aaaagccatg ctgcttcctt aggcgctgcc tgtggtcacc tgggctgtct gtcagtccag
      961 ttcattctga ctcacagcac cattcattca tgaactctgc tgcaagaacc aatgtcaaat
     1021 tcagaagaat catcatacaa gaagttgtca acagaaaact aattaaagta atgtgcataa
     1081 aagttgagtg ctgtgggggt ttctcgtcct tgtcatctgt gcgagtttat ggatcatatc
     1141 tgtgtgtgta ttttccagta catttttact tacagcccat ctgaagatca ctttgtgact
     1201 gtactttact ttataggttg gttttggcca tttcttggtt tttatattta tcaagactga
     1261 aaaagtttta agaaagcaag taaacatttg tgacttcatt attagccgga gtgtgtaaat
     1321 gtgtatttta tattgcggga atgcttggta atatcatttt tgttctgaat attctagctt
     1381 tacaaatttc ttttaaatgt gttgttcatt acaacttttt aaagtaccta aactttaggt
     1441 gttaattgga attaagtaaa tgctattttt gtattttgta gccccaaaat actgatgatg
     1501 tatatataca ggtattcaga gattaaaatc ttaaatctta
//
