LOCUS       NM_001389238            1366 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus parkin coregulated (Pacrg), mRNA.
ACCESSION   NM_001389238
VERSION     NM_001389238.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1366)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
REFERENCE   2  (bases 1 to 1366)
  AUTHORS   Wilson,G.R., Tan,J.T., Brody,K.M., Taylor,J.M., Delatycki,M.B. and
            Lockhart,P.J.
  TITLE     Expression and localization of the Parkin co-regulated gene in
            mouse CNS suggests a role in ependymal cilia function
  JOURNAL   Neurosci Lett 460 (1), 97-101 (2009)
   PUBMED   19463890
REFERENCE   3  (bases 1 to 1366)
  AUTHORS   Lorenzetti,D., Bishop,C.E. and Justice,M.J.
  TITLE     Deletion of the Parkin coregulated gene causes male sterility in
            the quaking(viable) mouse mutant
  JOURNAL   Proc Natl Acad Sci U S A 101 (22), 8402-8407 (2004)
   PUBMED   15148410
REFERENCE   4  (bases 1 to 1366)
  AUTHORS   Imai,Y., Soda,M., Murakami,T., Shoji,M., Abe,K. and Takahashi,R.
  TITLE     A product of the human gene adjacent to parkin is a component of
            Lewy bodies and suppresses Pael receptor-induced cell death
  JOURNAL   J Biol Chem 278 (51), 51901-51910 (2003)
   PUBMED   14532270
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.654381.1,
                                           SRR26360186.1744598.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-427               JAXUCZ010000001.1  52430390-52430816
            428-562             JAXUCZ010000001.1  52492063-52492197
            563-734             JAXUCZ010000001.1  52659242-52659413
            735-884             JAXUCZ010000001.1  52678232-52678381
            885-1366            JAXUCZ010000001.1  52852791-52853272
FEATURES             Location/Qualifiers
     source          1..1366
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q11"
     gene            1..1366
                     /gene="Pacrg"
                     /gene_synonym="RGD1561027"
                     /note="parkin coregulated"
                     /db_xref="GeneID:499021"
                     /db_xref="RGD:1561027"
     exon            1..427
                     /gene="Pacrg"
                     /gene_synonym="RGD1561027"
                     /inference="alignment:Splign:2.1.0"
     CDS             272..1045
                     /gene="Pacrg"
                     /gene_synonym="RGD1561027"
                     /note="parkin co-regulated gene protein; Park2
                     co-regulated"
                     /codon_start=1
                     /product="parkin coregulated gene protein"
                     /protein_id="NP_001376167.1"
                     /db_xref="GeneID:499021"
                     /db_xref="RGD:1561027"
                     /translation="MVAEKETLTLNKCPDKMPKRTKLLPQQTIQVHQPHSLVSEGFTV
                     KAMMKNSVVRGPPAAGAFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEK
                     LDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVIPQLIIPIKNALNLR
                     NRQVICVTLKVLQHLVVSAEMVGEALVPYYRQILPILNIFKNMNVNSGDGIDYSQQKR
                     ENIGDLIQETLEAFERYGGEDAFINIKYMVPTYESCLLN"
     exon            428..562
                     /gene="Pacrg"
                     /gene_synonym="RGD1561027"
                     /inference="alignment:Splign:2.1.0"
     exon            563..734
                     /gene="Pacrg"
                     /gene_synonym="RGD1561027"
                     /inference="alignment:Splign:2.1.0"
     exon            735..884
                     /gene="Pacrg"
                     /gene_synonym="RGD1561027"
                     /inference="alignment:Splign:2.1.0"
     exon            885..1366
                     /gene="Pacrg"
                     /gene_synonym="RGD1561027"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gatcagtcgc ttagcaacca ggaggctcac ctttggaagc ttttagcggc tctagcctcg
       61 gatcccagcc ctcttcccgc ccctcccctc ccctaaactc cctccacctt ggtgcttcca
      121 aacatctgga tcaccctggg caccacgagg ggttgaattt ctatcactag cgcgcctttt
      181 tacatttttt tcccgatccc ctgctcacat ctgtaaaagc cactggtttt tctaccacac
      241 ctttgataag aacaaaacgt tttctaggaa gatggtggca gaaaaagaga ccctgacctt
      301 aaacaaatgc ccagacaaga tgccgaagag gaccaaactg ctgccacaac agacgatcca
      361 ggtgcaccag cctcattccc tggtttctga gggcttcaca gtcaaagcca tgatgaaaaa
      421 ctcagtcgtg cggggtcctc cagccgcagg ggcatttaaa gaaaggccga ccaaacccac
      481 cgcattccga aaattttatg agcgaggaga cttcccaatc gcccttgagc atgactcgaa
      541 aggaaacaaa attgcctgga aggtagagat tgagaagctg gactaccatc attacctgcc
      601 tctgtttttt gatgggcttt gtgagatgac gtttccctat gagttttttg ctcggcaagg
      661 aatccacgac atgctggaac atggagggaa caagattcta cctgtcattc cgcagctcat
      721 tatcccgata aaaaatgcct tgaacctccg aaacagacag gtcatctgtg tcacgctcaa
      781 agttctccag catctggttg tgtccgctga gatggtgggt gaagctttgg tgccctacta
      841 ccgccagatc ctgccaatcc tgaacatctt taagaacatg aacgtgaact ccggggatgg
      901 catcgactac agccagcaga agagggagaa cattggtgac ctgatccagg agaccctgga
      961 agccttcgag cgctatggag gggaggacgc cttcatcaac atcaaataca tggtgcccac
     1021 ctatgagtcg tgcttgctga actgaccagg caactgcaag agggagcctc cctcggtatc
     1081 acaaccatct gtccccaatg ccctagcatc tcattatttg tgatttctac agctctcttt
     1141 ctacagctgc aaacatagta gtttctgggc caaaagactg ttagccccat tgagagcaag
     1201 gctttccaat acataaatag tgcctgtttc ttagattaca atagtgtact gtgcttattt
     1261 ttttttccat gaagagaatt gcttctttat ccagctcaga tggaggcagg agtccgagtt
     1321 aaaccttcag ttgtatagac aataaaacta taattctcat atgcaa
//
