LOCUS       NM_001113779            1154 bp    mRNA    linear   ROD 09-FEB-2025
DEFINITION  Rattus norvegicus PABPN1 like (Pabpn1l), mRNA.
ACCESSION   NM_001113779 XM_001079405 XM_226547
VERSION     NM_001113779.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1154)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1154)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 1154)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC158789.1.
            
            On or before Jan 27, 2008 this sequence version replaced
            XM_226547.4, XM_001079405.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158789.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5756307,
                                           SAMN06621351 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1154
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..1154
                     /gene="Pabpn1l"
                     /gene_synonym="Epabp2; Pabpnl1; RGD1562761"
                     /note="PABPN1 like"
                     /db_xref="GeneID:307920"
                     /db_xref="RGD:1562761"
     exon            1..274
                     /gene="Pabpn1l"
                     /gene_synonym="Epabp2; Pabpnl1; RGD1562761"
                     /inference="alignment:Splign:2.1.0"
     CDS             44..853
                     /gene="Pabpn1l"
                     /gene_synonym="Epabp2; Pabpnl1; RGD1562761"
                     /note="Embryonic poly(A)-binding protein 2; Embryonic
                     poly(A)-binding protein type II; ePABP-2; poly(A)binding
                     protein nuclear-like 1; poly(A)binding protein nuclear
                     1-like"
                     /codon_start=1
                     /product="embryonic polyadenylate-binding protein 2"
                     /protein_id="NP_001107251.1"
                     /db_xref="GeneID:307920"
                     /db_xref="RGD:1562761"
                     /translation="MWPSLSNELFPPPTEVWLQTVSSDPEAQGWGAWGRTEKTSLVPS
                     AGSDKEAEENEDSSFLLSLLEPENLAKSPVYNQELEAIRLKLWTMEHAEVLPEPPSVQ
                     RKATEEERAEARELLSPETIGCFFPGAPKENVEADHRSVYVGNVDYGGSAAELEAYFS
                     PCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAVRLDESTFRGRVIKVLPKRTNF
                     PGISSTDRGGLRTHSSSRAAFLQGSLQRKPRLRPHGQSRGRGRASPWFSPY"
     exon            275..410
                     /gene="Pabpn1l"
                     /gene_synonym="Epabp2; Pabpnl1; RGD1562761"
                     /inference="alignment:Splign:2.1.0"
     exon            411..478
                     /gene="Pabpn1l"
                     /gene_synonym="Epabp2; Pabpnl1; RGD1562761"
                     /inference="alignment:Splign:2.1.0"
     exon            479..585
                     /gene="Pabpn1l"
                     /gene_synonym="Epabp2; Pabpnl1; RGD1562761"
                     /inference="alignment:Splign:2.1.0"
     exon            586..673
                     /gene="Pabpn1l"
                     /gene_synonym="Epabp2; Pabpnl1; RGD1562761"
                     /inference="alignment:Splign:2.1.0"
     exon            674..813
                     /gene="Pabpn1l"
                     /gene_synonym="Epabp2; Pabpnl1; RGD1562761"
                     /inference="alignment:Splign:2.1.0"
     exon            814..1131
                     /gene="Pabpn1l"
                     /gene_synonym="Epabp2; Pabpnl1; RGD1562761"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgcaaagcc aaggttcacc cgacctgtcc tcattgtata cccatgtggc cctccctgag
       61 caacgagctc ttcccacccc ccactgaagt ctggctccag acggtctcct cggatcctga
      121 ggcccaaggc tggggggcct ggggcaggac tgaaaagacc tctttggtgc caagtgctgg
      181 aagtgacaag gaagcagagg aaaatgaaga ttccagcttc ctgctctcct tgctggaacc
      241 agagaactta gccaagtccc cagtctacaa ccaggagcta gaggccatcc ggctgaagct
      301 gtggaccatg gaacatgctg aggtcctgcc ggaaccaccc agtgtacaga gaaaggccac
      361 agaggaagag agggctgagg ccagagagct gctgagccct gagaccatag gctgcttctt
      421 ccccggggcc cccaaggaaa atgtggaggc tgaccacaga tctgtctacg taggcaacgt
      481 ggactatggt ggttcagctg cagaactgga ggcctacttc agcccctgtg gggagatcca
      541 ccgggtcact atcctgtgtg acaagttctc tggacacccc aagggctacg catatataga
      601 gtttgcttcg aagagctccg tccaggcggc tgtgcggctg gatgagagca ccttccgagg
      661 tcgggtcatc aaggtacttc ccaaaagaac gaacttccca ggaatcagct ccacagaccg
      721 tggcgggctg cggacacact cgagcagcag ggctgccttc ctgcagggta gcctccaacg
      781 aaaacctcgg ttaagacccc atggacagag ccggggccgt ggacgagcct caccgtggtt
      841 ctcgccatat tgaaaagata gcccagtttt aaagtggggc caggagctgg gtcaggagta
      901 cactgctgtc tctccgctta ctccaaatgg atcttcaaac ctggcagccc atatgagcct
      961 ttgaaggtgc ctagatcacc aggtcccagt gggaaggcgc tgggcaggga gattcagagg
     1021 ggagaggagg cttggggtaa gctgggattg gcatactcaa gtacttttaa agaaaaatag
     1081 gcatgcgtgt taatattaaa acataaatta ttaaacttga ctatatttta aaaaaaaaaa
     1141 aaaaaaaaaa aaaa
//
