LOCUS       XM_039106593            2885 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus poly(A) binding protein, cytoplasmic
            1-like (Pabpc1l), mRNA.
ACCESSION   XM_039106593
VERSION     XM_039106593.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2885
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2885
                     /gene="Pabpc1l"
                     /note="poly(A) binding protein, cytoplasmic 1-like;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 4 Proteins, and 65% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:296351"
                     /db_xref="RGD:1563142"
     CDS             876..2885
                     /gene="Pabpc1l"
                     /codon_start=1
                     /product="polyadenylate-binding protein 1-like"
                     /protein_id="XP_038962521.1"
                     /db_xref="GeneID:296351"
                     /db_xref="RGD:1563142"
                     /translation="MDTRGHGCSLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCR
                     DVATRRSLGYAYINFQQPADAERALDTMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIF
                     IKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNG
                     MLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQ
                     SVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNEL
                     KRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESSHSKG
                     FGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRRLSRSVLS
                     SFQQPTSYLLPAVHQVTGCLQLRLREQNVTDRGSVEMTLDKLLQSLKASFDLSLEGPT
                     CFLVFLELLTSDPLPPQSTTQTMYYSSASIAPMQPDPRWTAQPHGPSSTCPPAASVVQ
                     PLSTAPHPCIHLSSASQASSQVPHTQRVVNIGTQTTGPGGEGSCIPGQPLLAHRGSSA
                     VHSAHGVQESTVYVPGHQPLTVSMLDAAPLHEQKQMIGERLYSLIHDACAPLTGKITG
                     MLLEMDNLELLLLLESPESLHAKIEEAVAVLKAHRAMESADSYRN"
ORIGIN      
        1 gagttcgagg ccagtctggt cttcagagcg acttccaaga cacatggcta cataaagaaa
       61 ccctgtcttg aaaaaagaaa aaacaaaaca aaacaaaatc tttaaaaaaa aacaataaaa
      121 aatagttttt taaaagaatt ctataacatc ctgtgcttaa gaatgcagaa cagctgtggg
      181 tgttagggat ctccagggtg atgaatggtg cacttttatt ttatttgtat tccttaagat
      241 ttctttttag ttcaagtgta tgaatgtgtt tgtccgcatg catgaattac atcatgagca
      301 cacagtgccc aagtctccat ctcctcaggg ctttaaggcc acgggagcca atcaccatca
      361 acttagcttt tcctcgggcg ttaagctcct catgcctgca cggaggtatt ttacccgttg
      421 ggccatcttc ccaatctcaa aactctttaa cgacctcaaa acaagatatg gattctctag
      481 tttgtactga aacctacaaa aagccatctg cttttatcgt tgccaagagg gaagtgtctc
      541 cattttctat agagagagag agatgaatga cctgatgttc gaacctgcac cctgcctctt
      601 ctaaaagtct ccatctatca cgatctgcct tgactgcccc agacttctgg ccttcctcct
      661 aggcaaggtg ggagatgccg gtcacctgcg ccattctcgg cctgaggatt cccaggtggg
      721 tggggctagg caccgggatt ggttaaggca agggggcctt tgcaggcaaa caggacgact
      781 ggcagagccc tgctacagcc accaccacga ttgccagccc ggcaccctgc tagctggggc
      841 tgcttgctgg cctgcttctg ggtgccctgc acgccatgga caccaggggc cacggctgct
      901 cactctcctc gctctatgtg ggcgatctgc accccgacgt gaccgaagct atgctctatg
      961 agatgttctc ccccatcggc actattcttt ccatccgtgt gtgtcgggac gtggccaccc
     1021 ggcgctctct gggctatgcc tatatcaact tccagcagcc tgctgacgcg gagcgggcac
     1081 tggacacgat gaactttgag atgatcaaag gccagcccat ccgaatcatg tggtcccaca
     1141 gagacccagg ccttcgaagg tccggtatgg gcaacatctt tatcaaaaac ttggagaatt
     1201 ccattgacaa caaggctctg tatgacacct tctccacctt tgggagcatc ctgtcttcta
     1261 aggtggtata caatgagcat ggatcacggg gtttcggctt tgtgcatttt gagacccacg
     1321 aggctgccca gaaggccatc aacaccatga atgggatgtt gctgaatgac cggaaagttt
     1381 tcgtaggtca cttcaagtct cgccagaagc gggaggcaga gctgggggct cgggccctag
     1441 gattcaccaa catctatgtg aagaacctgc gcgtggacat ggatgagcag ggcctccagg
     1501 acctcttctc ccagtttgga aagacgcaga gtgtgaaggt gatgagagac agcaatgggc
     1561 agtcccgggg cttcggcttc atcaactttg agaagcatga ggaagcccag aaggctgtgg
     1621 accacatgaa tgggaaggag gtgagcgggc agctgctcta tgtgggccgg gcccagaagc
     1681 gggcagagcg gcagaacgag ctgaagcgca gatttgaaca aatgaagcag gagaggcaga
     1741 accgctacca gggtgtgaac ctttatgtga agaacctgga tgactccatt aatgatgata
     1801 ggctgaagga agttttttct acctatggag tgatcaccag cgctaaggtg atgacagaaa
     1861 gtagccacag caagggcttt ggctttgtgt gcttttcctc tccagaagag gcaacgaagg
     1921 ctgtgacaga gatgaacggg cgcatcgtgg gtacgaaacc actgtatgtg gccctggcac
     1981 agcgcaagga ggagcggaag gccatcttga ccaaccagta taggagacgc ctctctcgct
     2041 ctgtcttgag ctccttccag cagcctacca gctacctgct ccctgctgta caccaggtga
     2101 caggatgtct ccagctccgg ctgagggaac agaacgtcac agacagaggt tctgttgaaa
     2161 tgaccttgga caagctgctc caatccctta aagcctcatt tgatctgtct ttagaggggc
     2221 ctacatgctt tcttgtcttc ttggagctcc tcacctcgga tcctcttcct ccacagtcta
     2281 caacccagac tatgtactat agttctgcct ccatagcccc aatgcaacct gaccccaggt
     2341 ggacagccca gcctcatgga ccttcatcta cctgccctcc agctgcctcg gtggtccagc
     2401 ctctaagcac ggcaccgcac ccctgtatcc acctcagcag tgccagccag gcctccagcc
     2461 aggtgcctca cacgcagaga gtagttaaca ttggtaccca gactacagga ccaggtgggg
     2521 agggatcctg tattccaggc cagcctcttt tggcacatag aggatcctcc gctgtacaca
     2581 gtgcccatgg ggtccaggag tcgaccgtgt atgtccctgg ccatcagcct ctgactgtgt
     2641 ccatgctgga tgctgcaccc ctgcatgagc aaaagcagat gatcggggag cgtctctact
     2701 cccttatcca cgatgcctgc gccccactga ctggcaagat cacgggcatg ctgctggaga
     2761 tggacaacct ggagcttctg ttattgttgg agtccccaga gtccctccac gccaagatag
     2821 aagaggccgt ggcagtactg aaggcacatc gggcaatgga gtcagcagac agttacagga
     2881 actga
//
