LOCUS       NM_001166586            3806 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus PABIR family member 2 (Pabir2), mRNA.
ACCESSION   NM_001166586 XM_001054191 XM_577043
VERSION     NM_001166586.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On or before Oct 30, 2009 this sequence version replaced
            XM_577043.2, XM_001054191.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.60004.1,
                                           SRR26643298.33163.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-430               JAXUCZ010000021.1  137934171-137934600 c
            431-509             JAXUCZ010000021.1  137931537-137931615 c
            510-553             JAXUCZ010000021.1  137926412-137926455 c
            554-608             JAXUCZ010000021.1  137926250-137926304 c
            609-710             JAXUCZ010000021.1  137925900-137926001 c
            711-793             JAXUCZ010000021.1  137925532-137925614 c
            794-855             JAXUCZ010000021.1  137924645-137924706 c
            856-952             JAXUCZ010000021.1  137919364-137919460 c
            953-3806            JAXUCZ010000021.1  137908653-137911506 c
FEATURES             Location/Qualifiers
     source          1..3806
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq36"
     gene            1..3806
                     /gene="Pabir2"
                     /gene_synonym="Fam122b; RGD1560129"
                     /note="PABIR family member 2"
                     /db_xref="GeneID:501647"
                     /db_xref="RGD:1560129"
     exon            1..430
                     /gene="Pabir2"
                     /gene_synonym="Fam122b; RGD1560129"
                     /inference="alignment:Splign:2.1.0"
     CDS             333..1097
                     /gene="Pabir2"
                     /gene_synonym="Fam122b; RGD1560129"
                     /note="protein FAM122B; family with sequence similarity
                     122B; protein FAM122B-like"
                     /codon_start=1
                     /product="PABIR family member 2"
                     /protein_id="NP_001160058.1"
                     /db_xref="GeneID:501647"
                     /db_xref="RGD:1560129"
                     /translation="MAQEKMELDFEADTSEGGTLRRSNSAPLIHVLSDLSQVFEPYPL
                     RTGRNSATVMSHHSLEEGLDLMNRETANEREPQGGMQISHSWDESLSLSDSDFDKPEK
                     LYSPKRIDFTPVSPAPSPTRGFGKCTSPSLQMFVGSSEVPPSSVPNPRHFSRRSQSPV
                     KCIRPSVLGPLKRKGEMEIESQPKRPFQGATNMLSTDATQLSDFSSCSDILDGSSVSS
                     GLSSDSLATGSAPAESPVACSNPCSSFILMDDLSPK"
     exon            431..509
                     /gene="Pabir2"
                     /gene_synonym="Fam122b; RGD1560129"
                     /inference="alignment:Splign:2.1.0"
     exon            510..553
                     /gene="Pabir2"
                     /gene_synonym="Fam122b; RGD1560129"
                     /inference="alignment:Splign:2.1.0"
     exon            554..608
                     /gene="Pabir2"
                     /gene_synonym="Fam122b; RGD1560129"
                     /inference="alignment:Splign:2.1.0"
     exon            609..710
                     /gene="Pabir2"
                     /gene_synonym="Fam122b; RGD1560129"
                     /inference="alignment:Splign:2.1.0"
     exon            711..793
                     /gene="Pabir2"
                     /gene_synonym="Fam122b; RGD1560129"
                     /inference="alignment:Splign:2.1.0"
     exon            794..855
                     /gene="Pabir2"
                     /gene_synonym="Fam122b; RGD1560129"
                     /inference="alignment:Splign:2.1.0"
     exon            856..952
                     /gene="Pabir2"
                     /gene_synonym="Fam122b; RGD1560129"
                     /inference="alignment:Splign:2.1.0"
     exon            953..3806
                     /gene="Pabir2"
                     /gene_synonym="Fam122b; RGD1560129"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttttatcctc ttccattatg ccctgcattt ccagttatcc tttatcaacc cctgtgcctc
       61 tttttccttc tcccaccttt gtctctcctc cctcctcttt ttcatcctgt caccctcgca
      121 acaccagctc tacatcctcc tccgcccgcc ccccacatcc ttcctcatct gcatcctcct
      181 ctcctacttt tctccgccct cgcgcccaag cctccgccca ttagcccccg cccccagctg
      241 ccagtcccca gcagctcagt cctgcagtga gtccatagca aagcaccagg agctgagagc
      301 actgccggct gtgctggcta gcaagtctcc gaatggctca ggagaaaatg gagctggatt
      361 ttgaggctga cacatctgag gggggcaccc tgagacggtc caacagtgct cccctgatcc
      421 atgtgctcag tgacctttcc caggtttttg agccatatcc acttagaact gggaggaaca
      481 gtgcgacagt tatgagccat catagcttgg aagaaggcct ggatttgatg aacagagaaa
      541 ctgcaaatga aagagaacca caaggaggaa tgcagataag ccactcatgg gacgaaagct
      601 taagcctgag cgatagtgat tttgacaagc cagagaaatt atattctcca aagagaattg
      661 acttcactcc agtttctcca gcgccttccc caaccagagg atttggaaag tgcacatcgc
      721 catccttgca aatgtttgtg ggcagcagtg aggtgccacc aagttctgtt cctaatccaa
      781 gacatttttc aaggaggagt cagagcccag tcaagtgcat taggcccagc gttcttggtc
      841 ctcttaagag aaaaggggaa atggagatag aaagccagcc taagagaccg ttccaaggag
      901 caaccaacat gctgtctaca gatgctacac aattgtctga tttcagttca tgttcagata
      961 ttttggatgg cagtagtgtc agcagtggct tgtcctcaga ctcactggct acaggcagcg
     1021 ctcccgcaga gtctccagta gcatgctcca atccatgctc ttcgttcatc ttgatggatg
     1081 atctctcacc caagtgactt acccatttct gattgagtgt tttaactgtt tcccacataa
     1141 aacattcagt gaggaatgcg gagaactttg atccacagtg gggattaaag tttggcagat
     1201 tgcaaccatt ccgatgatgc gcctatttct gggcatctct cctctaaagt tcaattttgc
     1261 aagcagtcac cttactaaca tctgtttggg ctgacctcat tttgcctttg atgactaaaa
     1321 ctcaaataca catttttgat tgcttggatg acttttttcc ctagtgcctc aaagagcacc
     1381 tactttcaaa catttaaggg gaacactaat gcatattttc tataattgtt catttccctc
     1441 acagtggcaa aacagagttg atcagaaatt ctcttgcttg agagattgat aaaaattctg
     1501 ttgactacat actttcccat ctctttattt catggtaata ttcaaattgt ttttgattgc
     1561 tatcaaattt tcatttcttc tgcatcagct ttaaaggaca ttgttttgtt tcccttgcct
     1621 gtttgagctg cttccttgcc atttctcacc atggggaaga aacccatagt cgcttccatc
     1681 accacccata ttgcttcttt gctattggaa tgtatgcagt ggagagtgat tgtagagtgg
     1741 agaatgtgac tagactcaca ggatgcctgc attagtcacc ccaggttctt aggacattgc
     1801 taccacagtt gttatttctc tccccaaacc tggtgcctta aggaatatgt aaaatattgt
     1861 tgatatttct aggtggtgtt atcaaggaga agaaattcct gccttgacca gatgtgtgga
     1921 gcatctacaa atgaacgaat agttatttac acaaagcact gtacaaaagc aagcgtccat
     1981 gaagctgtca gtgtcttggg tagtattatg aggccttagg tgccttgggg tacgttgccg
     2041 tcatgtaggg gacatgtgtc gtagggtctt gtggaaatgg aagctttctg tatgtggctg
     2101 ctattctgtt tgctttgttc ccgattcctt attgtccttg cgtttgttct gtcatgtggt
     2161 gacctggtgt tctggttttg tattgtgcta gagtcagaac cctcttcttg tcctcgttgc
     2221 cctatagagg tcagttcgat atctctaagg aagctttgag gagctgaaaa ggtcagtgtg
     2281 ctcctgtgcc ctctgcttcc agaagttttg ttgagctcta agcagtgtat atgcagtgtg
     2341 acgtaacata tactctgtca tttttacaag agaaaactcc tgactaaaat atttaagaaa
     2401 tccaagtgtg atctattgtg gcattattta ttatgtatta cactagaaat agtgtaatag
     2461 tgtaatagta caatgtttat gttgttagat ttcttttaat gttcaacctg gtgggtggac
     2521 tatttgttta atttacccat tagaatcgtg atattaagtg aatgtaagaa acaaacagaa
     2581 attgttaaac ctaagtcttt tgaagtctaa aatcgttgga ggtggtttga tggtatttac
     2641 agactagaaa ttcgtgtgct tgaagcaaaa cctctattct aattatcaca gaacatcact
     2701 tagcttgctg cagctccatt atagaatcgg gtttgttctt ctgtttacat tgtaatcact
     2761 gtcataacag ctattactgg cttgagttcc catgttactt tagcctgtga aaagctcaga
     2821 atcctccaaa cctaacataa acgtgctgtt ataagaatca ctcacttgtg tgctatttta
     2881 aagaaccgtc tctttgatag cactggtgta tccactctgt taatgaacca tattgaaagg
     2941 cttttgcctt cataatgata agagatgagt ttttctttca ggagatttgt ctgccttcac
     3001 tcttcttctg ttttatttga cttaaaggga cactttgcag ttcaaattta gagtccaaat
     3061 ttaggcctgt taagaaataa tcgttgaaat gtgatgctat ctgaaggtgt gtttaaaatt
     3121 cgatggtaaa agcaggagat tgaaatcgtc ccaatggtgt ggtgaggcga aagaggcaga
     3181 aggattcagt ttactgtttt agaccaactc ctttactaat gattctaact gagtgtttta
     3241 aattcattct ttgccataag cgtatccagt tcattctgat cactcttgct ccctaccctc
     3301 cctcatctct ctcctactca tcagtcacca cttctttcta cagattcctt tgccacactc
     3361 ttgttttttc ctttgtgaac taaccttttg ttattgttgt cttctattgt ttaaatggac
     3421 tagaaagcta aatttgtgca gggattgttt tgaaacaaat aaaaatggta atatgctaat
     3481 ccacagagca gctttgttga cagtacccct ttatttttat ataaagtcta atatttgaaa
     3541 tgtagttatt gttacaaagt aaaattcttt cttcctattc tcatattata tcatatattt
     3601 taaggttcta tttgaaaact actacaaaaa tgaaaccata ataaaatcct atagatactg
     3661 gttttgcttg aatgacttat aaatcactgt tttatgataa ctgcttttgg aataatagaa
     3721 agttttgtga aatgttgacc tagtgtatat cctgagattg tgaatttaat aaagtatata
     3781 tacgtgtata aaaagatgga atcata
//
