LOCUS       XM_006256425            2169 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus prolyl 4-hydroxylase subunit alpha 1
            (P4ha1), transcript variant X1, mRNA.
ACCESSION   XM_006256425
VERSION     XM_006256425.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006256425.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006256425.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2169
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2169
                     /gene="P4ha1"
                     /gene_synonym="PHalphaI"
                     /note="prolyl 4-hydroxylase subunit alpha 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 56 ESTs, 13 long SRA reads, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 236 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:64475"
                     /db_xref="RGD:621000"
     CDS             230..1834
                     /gene="P4ha1"
                     /gene_synonym="PHalphaI"
                     /codon_start=1
                     /product="prolyl 4-hydroxylase subunit alpha-1 isoform X1"
                     /protein_id="XP_006256487.1"
                     /db_xref="GeneID:64475"
                     /db_xref="RGD:621000"
                     /translation="MIWGVLMMGILLPQCSAHPGFFTSIGQMTDLIHNEKDLVTSLKD
                     YIKAEEDKLEQIKKWAEKLDRLTSTATKDPEGFVGHPVNAFKLMKRLNTEWSELENLI
                     LKDMSDGFISNLTIQRQYFPNDEDQVGAAKALFRLQDTYNLDTNTISKGNLPGVKHKS
                     FLTAEDCFELGKVAYTEADYYHTELWMEQALMQLEEGEMSTVDKVSVLDYLSYAVYQQ
                     GDLDKALLLTKKLLELDPEHQRANGNLVYFEYIMSKEKDANKSASGDQSDQKTTPKKK
                     GIAVDYLPERQKYEMLCRGEGIKMTPRRQKRLFCRYHDGNRNPKFILAPAKQEDEWDK
                     PRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPVTGALETVHYRISKSAWLSGYEDP
                     VVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRI
                     ATWLFYMSDVSAGGATVFPEVGASVWPKKGTAVFWYNLFASGEGDYSTRHAACPVLVG
                     NKWVSNKWLHERGQEFRRPCTLSELE"
ORIGIN      
        1 gagcgcacgt agcgagagct gtggccgccc cgttctcggc gcgccggcgc ggctggggac
       61 tataaaaggc tcctctggct ccctctgctg cccagtcgca ccgccagcag gctgagcgcg
      121 gcagggagct acctagtggg gactacaggc gacaggaccg acccgagccg agctgtcgcc
      181 ttcctcacgg cccgctatcc aggtgtgtga acctgtgggg tgctccaaga tgatctgggg
      241 tgtattaatg atggggattc tacttcctca gtgttcagcc catccaggct tttttacttc
      301 aattggtcag atgactgact tgatccataa tgagaaagac ctggtgacgt cactaaaaga
      361 ttacattaaa gcagaagagg acaagttaga gcaaatcaaa aaatgggcag agaagttaga
      421 ccggctaaca agtacagcaa caaaagatcc agaagggttt gtcggacacc ctgtaaatgc
      481 attcaagtta atgaaacgtc tgaacaccga gtggagtgag ttggagaatc tgatcctcaa
      541 ggatatgtca gatggcttca tctctaacct gaccattcag aggcagtact tccctaacga
      601 cgaagaccag gttggggctg caaaagcttt gtttcgtctg caagacacct acaacctaga
      661 cacgaatacc atctcgaagg gcaatcttcc aggagtgaaa cacaagtctt ttctaacagc
      721 tgaggactgc tttgagttgg gcaaagtggc ctatacagaa gcagattatt accacacaga
      781 actctggatg gagcaggctc tgatgcagct ggaggaggga gagatgtcta ctgtagacaa
      841 agtctcggtt ctagattatt tgagctatgc agtgtaccag cagggtgacc tggataaggc
      901 acttctgctt acaaagaaac ttcttgaact agatcctgaa caccagagag ccaatggtaa
      961 cttagtatat tttgagtata taatgagtaa agaaaaagat gccaataagt ctgcttcggg
     1021 tgaccagtct gatcagaaaa ctacaccaaa gaaaaagggg attgctgtgg actacctgcc
     1081 agagagacag aagtacgaaa tgctgtgccg tggggagggt atcaaaatga ctcctcggag
     1141 acaaaaaagg ctgttctgcc gctaccatga tggaaaccgg aatcctaaat ttatcctggc
     1201 cccagccaag caggaggatg agtgggacaa gcctcgcatc attcgtttcc atgacatcat
     1261 ctcagatgcc gagattgaga tcgtcaaaga tttagcaaag cccaggctga ggcgagccac
     1321 catttcaaac ccagtaacag gagccttgga gacggtacat tacagaatta gcaaaagtgc
     1381 ttggctgtct ggctatgaag atcctgtggt gtctcgaatt aatatgagaa tacaagatct
     1441 cacaggactg gatgtttcca cggcagagga attacaggta gcaaattatg gagttggagg
     1501 acagtatgaa ccccattttg actttgccag gaaagacgag ccggatgctt ttagagagct
     1561 tgggacagga aataggattg ccacgtggct cttctacatg agtgatgtgt ctgctggagg
     1621 cgctactgtt tttcctgaag tgggagccag tgtttggccc aaaaaaggca ctgctgtctt
     1681 ctggtacaat ctgtttgcca gtggagaagg agattacagt acacggcacg cagcctgtcc
     1741 tgtgctagtg ggaaacaaat gggtatccaa caaatggctc catgaacgtg gacaggaatt
     1801 tcgaaggccg tgtaccctgt cagaattgga atgacaacca ggcttcccgt ggctcctctc
     1861 gtcctctaac gcaccaggca tgatcgctga ctgtaacatt cagaagttta cagctgacta
     1921 acactccatg attaattcgg ccgtgaaccc catcccatgt ttcatctgtg gacaatcact
     1981 tatttttgtg aattttttta aattaacact cagtcaccac attgtgtaaa acttatggtt
     2041 cagttatcac aggatacagg atatttaaaa tgaggaacct agttctgttg tttaaaagag
     2101 ctttttggtt gatttaaaaa aaaaaaaaaa aaacgcgtcc agtagtaaat ctcacccatc
     2161 tcaggagct
//
