LOCUS       NM_001289820            1974 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus ovo-like zinc finger 3 (Ovol3), mRNA.
ACCESSION   NM_001289820 XM_001078974 XM_344878
VERSION     NM_001289820.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1974)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000001.1.
            
            On Sep 19, 2014 this sequence version replaced NM_001289820.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760389
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1449              JAXUCZ010000001.1  94614605-94616053   c
            1450-1514           JAXUCZ010000001.1  94614467-94614531   c
            1515-1716           JAXUCZ010000001.1  94613556-94613757   c
            1717-1974           JAXUCZ010000001.1  94612417-94612674   c
FEATURES             Location/Qualifiers
     source          1..1974
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..1974
                     /gene="Ovol3"
                     /note="ovo-like zinc finger 3"
                     /db_xref="GeneID:365226"
                     /db_xref="RGD:1583800"
     exon            1..1449
                     /gene="Ovol3"
                     /inference="alignment:Splign:2.1.0"
     CDS             1356..1928
                     /gene="Ovol3"
                     /note="OVO homolog-like 3; ovo-like 3; putative
                     transcription factor ovo-like protein 3-like"
                     /codon_start=1
                     /product="putative transcription factor ovo-like protein
                     3"
                     /protein_id="NP_001276749.1"
                     /db_xref="GeneID:365226"
                     /db_xref="RGD:1583800"
                     /translation="MPRVFLVRSRRPQPPNWSHLPDQLRGDAYVPDCSSPAVPPAHSS
                     SGLRDTWAASSQGTLTSVPKGPGTLSCPLCPKAFPLQRMLTRHLKCHSPARRHVCHYC
                     GKGFHDAFDLKRHMRTHTGIRPFRCGACGKAFTQRCSLEAHLAKVHGQPASYAYRERR
                     EKLHVCEDCGFTSSRPEAYAQHRTLHRSTT"
     exon            1450..1514
                     /gene="Ovol3"
                     /inference="alignment:Splign:2.1.0"
     exon            1515..1716
                     /gene="Ovol3"
                     /inference="alignment:Splign:2.1.0"
     exon            1717..1974
                     /gene="Ovol3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttttctcaat cgaagtttcc tcttcccaag tgactctggt ttgtgccaag ttgatataaa
       61 accagccagc acatcacata caaggtggaa attgaaccaa ttcctatggt ttgtcctttt
      121 gggctcttgt gtatgccctc acaccaccac taccaccaaa cattaaaaat gaaatgtaaa
      181 tgtacctttt cttcccagca agccttcgta acactattcc ctctggctga aactggggaa
      241 ttcattttcc tcctcagcta tgtaagatca gcttggccta catgagaccc tctactgaga
      301 tggctcaggg gtaaaggccc ttggatgcaa gctggatggc gggccccaca caaacctata
      361 ggcaagatta gaatcttctt ttggttccaa gaattctgct ctcccagttt tgcctatccc
      421 agcttggatt actctgttct tcatgaattg actattctgg gtgtcactgc tctctctcct
      481 ttgtggcccc acacactgtg ctcattttca gtactgaact aagtaaggtc tgcctatagt
      541 tagacttcta gtctagaact ccattcagaa gactgtcaga gagactagag aaagtagctg
      601 tgaagacagt gttcacaatt ctgaacttag ttcagacatc agagaaggag cagtccagaa
      661 ctgcccaccc actatggatg ggaggagccc cgacaatcag taggaactgg gctgttgaca
      721 aaccagcatt ttacagccct aagccagaat gatgccatgt catctttgga aatctaaaga
      781 tcagagagag agagcatgtg catgagtgaa agcttgagga cgcacagccc catctttatt
      841 tttgccttta actactagtt tgctgtcatc ctacaccagt ggcacaaaac aatcacagct
      901 gcccccaccc gcatcctcgg acagctgctg tgatttgaat aactaggcag gctgatggac
      961 gtccagggga ctgatttgcc tggtaaacag tccctagagt ctgtggccct tccaggcctg
     1021 gggccatgtg tctttttgat ctccatcccg aagcgcagcc taggctcttc tctcactcaa
     1081 gcctccttgg tggggagggg agggtgttct ccagtgtctc tgtaccctgg agatggcaca
     1141 gttgcctggg agcctggact agagaaggag ccatgatggc aggccccagc aggggtaacc
     1201 agagccagct aaggctgctc cccaggcttg tcccaaaatt tgcatgagaa cgaatgaggc
     1261 tgccgtgggt ctctggattt cacctagttc tggggcagag gtctgacagg cagcagacag
     1321 aggaggcagc tctgtgaagt accgtcctga aagcaatgcc ccgagtcttt cttgtgagga
     1381 gtcggcgtcc acagccacct aactggagcc accttcctga ccagctccgg ggagatgcct
     1441 atgtcccaga ctgcagcagc ccggcagtgc caccagcaca cagctcttct ggtctgagag
     1501 acacgtgggc agcgtcctca caggggacac tgacctctgt tcccaagggc cctgggacac
     1561 tcagctgccc actgtgcccc aaggccttcc cgctgcaacg catgctgact cggcacctca
     1621 aatgccacag cccagcaagg cgccacgtgt gccactattg tggtaaaggc tttcacgatg
     1681 ccttcgatct caagcgtcac atgaggactc acactggaat acggccattc cgctgcggag
     1741 cttgtgggaa agctttcaca caacgctgct cccttgaagc tcatcttgcc aaggtgcacg
     1801 ggcagccagc cagctacgct taccgggaac gcagggagaa gctgcacgta tgtgaagact
     1861 gtggcttcac cagctctcgg cctgaggctt atgcacagca ccgcacccta caccgcagca
     1921 caacctgata tactgactgc tctcctaccc acaagacaaa taaacaccgg aaac
//
