LOCUS       NM_001037648            1564 bp    mRNA    linear   ROD 06-OCT-2024
DEFINITION  Rattus norvegicus OTU deubiquitinase with linear linkage
            specificity like (Otulinl), mRNA.
ACCESSION   NM_001037648 XM_226886
VERSION     NM_001037648.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1564)
  AUTHORS   Ceccarelli,D.F., Ivantsiv,S., Mullin,A.A., Coyaud,E., Manczyk,N.,
            Maisonneuve,P., Kurinov,I., Zhao,L., Go,C., Gingras,A.C.,
            Raught,B., Cordes,S. and Sicheri,F.
  TITLE     FAM105A/OTULINL Is a Pseudodeubiquitinase of the OTU-Class that
            Localizes to the ER Membrane
  JOURNAL   Structure 27 (6), 1000-1012 (2019)
   PUBMED   31056421
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC107649.1.
            
            On Dec 9, 2005 this sequence version replaced XM_226886.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC107649.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132264 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1564
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q22"
     gene            1..1564
                     /gene="Otulinl"
                     /gene_synonym="Fam105a"
                     /note="OTU deubiquitinase with linear linkage specificity
                     like"
                     /db_xref="GeneID:310190"
                     /db_xref="RGD:1563205"
     exon            1..136
                     /gene="Otulinl"
                     /gene_synonym="Fam105a"
                     /inference="alignment:Splign:2.1.0"
     CDS             82..1143
                     /gene="Otulinl"
                     /gene_synonym="Fam105a"
                     /note="protein FAM105A; family with sequence similarity
                     105, member A; inactive ubiquitin thioesterase FAM105A"
                     /codon_start=1
                     /product="inactive ubiquitin thioesterase OTULINL"
                     /protein_id="NP_001032737.1"
                     /db_xref="GeneID:310190"
                     /db_xref="RGD:1563205"
                     /translation="MKATRSAPRERERSRTTSGSDQVHSWILVPSQVLHAVWRIARAS
                     VMTALSLLSATLSYFRSLYLYLGHQLKWWIGYLQRKFKRNLSVEAEVDLLSYCAREWK
                     GETPRARLMRKAYEELFWRYHVKCVRPVKRDNYDALRSVLFQIFSQGLSFPSWMKEKD
                     IVKLPEKLLFSQGCNWIQQYSFGPEKYTGSNVFGKLRKCVELLKLQWTEFSGMRDYHK
                     RGSMCNSLFSDAILECKLYEALKFLMLYQVTEVYEQMKTNKIVPSLFRLLFSRESSPD
                     PLSFMMNHLNSIGDTCGLDQIDMFILGYSLQVKIKVFRLFKFNSRDFAVYYPEEPLRE
                     WPEISLLTENDHQYHIPVF"
     exon            137..296
                     /gene="Otulinl"
                     /gene_synonym="Fam105a"
                     /inference="alignment:Splign:2.1.0"
     exon            297..328
                     /gene="Otulinl"
                     /gene_synonym="Fam105a"
                     /inference="alignment:Splign:2.1.0"
     exon            329..420
                     /gene="Otulinl"
                     /gene_synonym="Fam105a"
                     /inference="alignment:Splign:2.1.0"
     exon            421..570
                     /gene="Otulinl"
                     /gene_synonym="Fam105a"
                     /inference="alignment:Splign:2.1.0"
     exon            571..699
                     /gene="Otulinl"
                     /gene_synonym="Fam105a"
                     /inference="alignment:Splign:2.1.0"
     exon            700..969
                     /gene="Otulinl"
                     /gene_synonym="Fam105a"
                     /inference="alignment:Splign:2.1.0"
     exon            970..1517
                     /gene="Otulinl"
                     /gene_synonym="Fam105a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gttcgggact gcggctgcgg ggaagcgagc cgggcgacgg gctgtagcag agggtgcgcg
       61 cggtgaaggt gcgcagcccg catgaaggcg acgaggagcg cgccgcggga gcgggagcgc
      121 tctcggacca cctcaggaag tgaccaagtt cactcttgga tactagttcc aagccaagtc
      181 cttcatgctg tctggagaat agcaagggcc tctgtgatga cggcgctctc tcttctgtca
      241 gctaccctca gctacttcag aagcctgtat ttgtatttag ggcatcagct gaaatggtgg
      301 attggctatc tacagagaaa gttcaaaaga aacctcagtg tggaggcaga agtagatcta
      361 ctcagctatt gtgcaagaga gtggaaggga gaaaccccgc gtgctagact gatgaggaag
      421 gcttatgagg aactcttctg gaggtaccat gttaaatgtg ttcgaccagt gaagagagat
      481 aactatgacg ctctcaggtc tgtgttgttc cagatcttca gccaaggcct ctccttccca
      541 tcatggatga aggaaaaaga catcgttaag cttcctgaaa agctactctt ttctcaaggc
      601 tgcaactgga tccagcagta cagtttcggg cctgagaagt acacaggttc caatgtgttt
      661 ggaaagttac ggaaatgtgt ggagttacta aaactgcagt ggactgagtt tagtgggatg
      721 cgagattacc acaagagagg gagcatgtgt aacagcctct tctccgacgc catcctggag
      781 tgtaaactgt acgaagcttt gaagttcctc atgctctacc aggtcacaga agtgtacgag
      841 caaatgaaga ccaacaagat tgtccccagc cttttcagac tcctgttctc ccgagagtca
      901 tcaccggatc ccttgagctt tatgatgaat cacctgaatt ccataggaga cacgtgtggt
      961 ttggatcaga tcgacatgtt tatactcggg tattctcttc aagtaaagat aaaagtgttc
     1021 cgactgttca agtttaactc cagagacttt gcagtctact accccgagga gcctctcagg
     1081 gagtggccag agatctccct gctgaccgag aatgaccacc agtaccacat tcctgtcttc
     1141 taagtctgcc atggactgaa catcagctct tctcagtgac agtgggcaca cttgaagaaa
     1201 agtgcttcag ccagggagag ctccgagacc tcagaacgct gggtggagga gtcacccaca
     1261 gggtggctca ccttctgttt cggtgatgtt tttcccagca gcacacatct gtggcttggt
     1321 gggttgactt cgtccatgag ggatctgctg ggttgggtct ttaaaacata gggaaactta
     1381 atgcggacaa aaattggaag ggaaacagct accctgagca gcaggagtgt tttagtctct
     1441 gatcttcatg ttcttccgaa agactctatg gatttggaac cgtcataaat aaacagggcc
     1501 gagttttaca agcgttaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1561 aaaa
//
