LOCUS       NM_001401127            2175 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus OTU deubiquitinase 6A (Otud6a), mRNA.
ACCESSION   NM_001401127 XM_228584
VERSION     NM_001401127.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2175)
  AUTHORS   Mevissen,T.E., Hospenthal,M.K., Geurink,P.P., Elliott,P.R.,
            Akutsu,M., Arnaudo,N., Ekkebus,R., Kulathu,Y., Wauer,T., El
            Oualid,F., Freund,S.M., Ovaa,H. and Komander,D.
  TITLE     OTU deubiquitinases reveal mechanisms of linkage specificity and
            enable ubiquitin chain restriction analysis
  JOURNAL   Cell 154 (1), 169-184 (2013)
   PUBMED   23827681
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000021.1.
            
            On Feb 2, 2022 this sequence version replaced XM_228584.5.
            
            ##Evidence-Data-START##
            Transcript is intronless :: SRR26643293.32705.1,
                                        SRR26360181.2550510.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2175              JAXUCZ010000021.1  69554215-69556389
FEATURES             Location/Qualifiers
     source          1..2175
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq22"
     gene            1..2175
                     /gene="Otud6a"
                     /gene_synonym="RGD1560855"
                     /note="OTU deubiquitinase 6A"
                     /db_xref="GeneID:302426"
                     /db_xref="RGD:1560855"
     exon            1..2175
                     /gene="Otud6a"
                     /gene_synonym="RGD1560855"
                     /inference="alignment:Splign:2.1.0"
     CDS             79..951
                     /gene="Otud6a"
                     /gene_synonym="RGD1560855"
                     /EC_number="3.4.19.12"
                     /note="OTU domain containing 6A"
                     /codon_start=1
                     /product="OTU domain-containing protein 6A"
                     /protein_id="NP_001388056.1"
                     /db_xref="GeneID:302426"
                     /db_xref="RGD:1560855"
                     /translation="MDDTEHELQRVIRRHYREKRELQAHIQTLKASVPKNDKGRRKQL
                     LSDIARLEAEMEQRHEQELEKFGENPESGVDSVTADLKKMNLENMPPRPAKSQKRRDR
                     RANLERRRQERMPAAQAEQLAAYRREEEEKVAAILGAKNLEMKTIPADGHCMYRAIQD
                     QLVFSVTIESLRYRTAYYMRKHIDDFLPFFTEPEAGNFYTREDFLRYCDDIVHKASWG
                     GQLELRALSHVLQTPIEVVQANSPIIVIGEEYTRKPLTLVYLHYACDFGEHYNSVKPI
                     EVPGAVGGMAPRLF"
ORIGIN      
        1 gagaggttgt acttgcctgt ctggtgatct gaactgttgg tttcctccag acttgaactc
       61 ccattttcca ctagtaagat ggatgacact gagcatgaac tccaacgagt gatccgtcgc
      121 cactatcgtg aaaagaggga gttacaagct catatccaga ccctgaaagc ttccgtcccg
      181 aagaacgaca agggaagacg aaagcagctg ctctctgata tcgcccgtct cgaggccgag
      241 atggagcaaa ggcacgagca ggagctggaa aaatttggag aaaatcccga gagtggtgtg
      301 gattcagtta cagcggacct caaaaagatg aatctcgaga atatgcctcc acgcccagca
      361 aagtcccaga aacgccgaga ccgaagagct aacctggaga gacggcgcca ggaaaggatg
      421 cctgcggccc aggctgagca gctggctgct taccgtcgtg aggaggagga gaaggtcgct
      481 gccattctcg gagctaaaaa tttagagatg aagaccatcc ctgctgacgg ccactgcatg
      541 taccgggcca tccaggacca gctggtattc tccgtgacaa tagagagcct gcggtaccgc
      601 actgcctact acatgaggaa acatattgat gacttcttac ctttcttcac cgaacccgag
      661 gcaggcaact tctacacccg ggaggacttc ctgaggtact gtgatgacat cgtgcacaag
      721 gcttcgtggg gaggccagct ggagctgaga gccctttcgc atgtcctgca gacccctatc
      781 gaggtggtac aggccaactc acccatcatt gtcatcgggg aggagtacac caggaagccg
      841 ctcacgctgg tctatctgca ctacgcctgc gacttcggag agcactacaa ttcggtgaag
      901 cccattgagg tccctggagc agttggagga atggcgccac gactcttcta gaagtttcca
      961 tcagacacaa aggaactctg gcctaggcgc catctttgtc acctctgtgg ccgtggttcc
     1021 taggagaacc ggagcagcta tggcgtcttc gtaggaatac ttgcttttcc ttcgctgatt
     1081 tttgtttctg cttgtttttc aagatttgtt tgtctgtgtc ctgcctcttc tttgcctctt
     1141 ctttatttgt ttgtatgttt ggggggaggg ggttggaggg gggttgtttg ttttgttttg
     1201 gggtcattgt ttgttttttc ccccctctca gatttgtgtg tgtgtgtgtg tgtgtgtgtg
     1261 tgcgtgcgtg cgtgcgtgcg tgcctgcatg cgtgcgtgtg tgcgcgcgca tgtgtgtgtg
     1321 agtgtgtgtg tgtctcccct ctcatgtggc agggaatggg ataacatctt cttgggacac
     1381 ctaagaggct taaatttcat caactctaac atcatttggc cctttggtgc ttttgtctag
     1441 gtgaggtttc agttaggctg aaaatggaaa tttggcgttt tgctcattgt ttacctgggc
     1501 ggaaatgttt agtagaagga ttcaggttgt gggaatttcc ctgcaaattt atcagcccac
     1561 ttgataaaag tacagttggt atgactgaaa tgacttatga gtgtttttaa ggaaaaaagt
     1621 cacagctggc tgacttgctc ttaacaatgt taaaatacct gggttaattt gtttggtttt
     1681 atttttcatt caaacttgta aagctaggtg caaatgggtt ttagttaccc agatattttc
     1741 taagcactaa aaactgtgtt ttaataggta aatatagctg ttagctacag aaattcaatt
     1801 taatgaacca gtagctttaa ggtaaggttt accttaaaga tgtggaagat ctgaacttag
     1861 tgatgttttc ttttttaatt tttagagaga taaaatatat caaaagtgac ttctggaatc
     1921 tcttccagtt tttgtataaa ggaatgcagt gaacaataca gtggtttctg ttagaaatca
     1981 ttgtcttaaa tgtgacattc aaagggaaga gcaagaatgg aatgatttgc agggttatca
     2041 ttcttgagtg ttagagaagt tacttattca taaaaaataa aaaccgttgt ccctttcaga
     2101 tgatctcaaa tagtatatgt aagtttaaaa actttttgaa aactaatgca atgtgttaaa
     2161 aaaaataaaa gcaac
//
