LOCUS       XM_006232488            1476 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus otolin 1 (Otol1), mRNA.
ACCESSION   XM_006232488
VERSION     XM_006232488.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006232488.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006232488.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1476
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1476
                     /gene="Otol1"
                     /note="otolin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 Proteins, and 65%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:295117"
                     /db_xref="RGD:1562064"
     CDS             1..1449
                     /gene="Otol1"
                     /codon_start=1
                     /product="otolin-1"
                     /protein_id="XP_006232550.1"
                     /db_xref="GeneID:295117"
                     /db_xref="RGD:1562064"
                     /translation="MWIFSLLCVLLITLSADHVDTKAKTTPYSKFTKKFEGKETLKGL
                     KPSSGLSLDEEETLRTEMAAMAEPTTGSPALATADPTTGPSASATTRLLPLESFSLDT
                     ANFFLNCCHCCSFVTVQKGEPGKTGQQGPKGETGDTGSPGPPGTSGPQGPKGQKGEKG
                     LKGDRGDQGAGGIPGYPGKPGEQGALGLKGDKGNIGPAGTKGQKGSKGDLCGNGTKGE
                     KGDPGASGAHGFIGQPGAKGEKGGVGEKGYRGDSGQRGEKGQKGEKGMEGEKGSKGDV
                     GAEGKRGSDGLPGLRGDPGPKGEKGETGSPGFTGPAGPKGELGNKGVRGPTGKKGSRG
                     MKGSKGEATQVPQSAFSALLSKPFPPPNIPIKFDKILSNDQGDYSPVTGKFNCSVPGT
                     YIFSYHVTVRGRPARISLMARNRKQFKSRETLYGQQVDQASLLLVLKLSAGDQVWLEV
                     SKDWNGLYVGPEDDSIFSGFLLYPEETLRKSP"
ORIGIN      
        1 atgtggatat tttctttgct ttgtgttctt ttaattactt tgtctgcgga tcatgtggac
       61 acgaaagcaa agaccacacc atacagcaaa tttacgaaga aatttgaagg aaaagagacg
      121 ctgaagggct taaagccatc cagtggcctc tctctggacg aagaagaaac cctccgtaca
      181 gaaatggctg ccatggcaga gcccaccact ggatcccccg ccttggcaac ggcagacccc
      241 accactggcc cctctgcctc cgccacaacc cgtctccttc cccttgagag cttctctctg
      301 gacacggcta atttcttttt gaattgctgc cattgttgtt catttgtcac tgtgcagaaa
      361 ggagaacccg gaaagactgg acaacaaggt cctaaaggag agactggtga cactggaagc
      421 ccaggacccc caggaaccag tggaccccaa ggccccaaag gccagaaagg agagaaagga
      481 ctaaagggag accgcgggga ccaaggagca ggtggcattc caggataccc aggaaagcca
      541 ggagagcaag gtgcacttgg tctcaaggga gataaaggaa acatcggccc agcaggaacg
      601 aaaggacaaa aaggctccaa gggggacctg tgtgggaatg gcaccaaggg agagaaagga
      661 gaccctgggg cctctggggc ccatggattc attggacagc ctggggccaa gggcgagaag
      721 ggtggtgtcg gggagaaagg ctaccgtggg gattcagggc agagggggga aaaggggcag
      781 aaaggggaga aagggatgga gggagagaaa ggtagcaaag gtgatgttgg tgcagaaggc
      841 aaaaggggtt cagatggtct accagggctc agaggcgatc ccggccctaa aggagaaaaa
      901 ggagagacag gttctccggg tttcaccgga cctgctgggc caaagggtga gcttggaaac
      961 aaaggagttc gagggccaac agggaagaag ggctcccggg gtatgaaggg ttccaaaggc
     1021 gaggccactc aagtcccaca gtcagctttc agtgcccttt tatctaagcc tttccctccc
     1081 cccaatatcc ccatcaaatt tgacaagatt ctttccaatg accaagggga ttatagccct
     1141 gtcactggga aatttaactg tagtgttcct gggacatata ttttttccta tcatgttact
     1201 gtcaggggtc gacctgctcg aataagcctc atggcccgca acaggaagca gttcaagtcc
     1261 agagagacgc tctatggtca gcaagtagat caggcctctc tcctcctcgt tctgaaattg
     1321 agtgcaggag atcaagtgtg gctggaggta tcaaaggact ggaatggact gtatgtcggc
     1381 ccggaggatg acagcatctt tagtgggttc cttctgtacc cagaggaaac tcttagaaag
     1441 tcaccataaa tttagttttt tgatactgca cttttg
//
