LOCUS       XM_039080122            6869 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus otogelin-like (Otogl), transcript
            variant X6, mRNA.
ACCESSION   XM_039080122
VERSION     XM_039080122.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080122.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6869
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6869
                     /gene="Otogl"
                     /note="otogelin-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:685868"
                     /db_xref="RGD:1589018"
     CDS             336..6869
                     /gene="Otogl"
                     /codon_start=1
                     /product="otogelin-like protein isoform X6"
                     /protein_id="XP_038936050.1"
                     /db_xref="GeneID:685868"
                     /db_xref="RGD:1589018"
                     /translation="MGFVKPGGSITLKHLMESTTTSQEAVLISLQRIVVIWSLSTQYG
                     LSLPQTIGQVHFEKLADYILVKTTFGFSLAWDGISGIYLKLSEEHRGKSCGLCANYNG
                     IQSDDFVIHQEDYTEDIAMFANSWLVLTPDDARCVPTPSDFPNPCSSGMPAFEAIFFK
                     CQILLQFPFLSCHEYIDPYLYIASCVNDLCKTDDDETYCRAATEYARACSHAGFPIQD
                     WRDDFPACTDKCDDSFVHRDCISCCPPSCTFDKQCLGSNLHCLDGCYCADAGLIMDNG
                     TCISLESCPCSFHGLAYSVGSKIEQECTECVCVGGVWNCTEHDCPVQCSVVGDSHFTT
                     FDGRHYSFIGLCQYILVKGTGKDRFTITLQKAHCEQNLGLVCLQSITLILEDDFNKQV
                     TLSRGGQILTSPNQGFTLNGVVEIQTLSSLFILLRTTFGLKILFAIDGERIYIQLSSA
                     WKRRTLGLCGTFNGNIRDDFLSPSGMIEGTPQLHAHAWRVSSTCFAPVHVPMVDPCNI
                     NQQNIGYAVHCDVIHQELFAPCHVYVSPGLYYQLCRHDACKCGSSCLCNALAHYAYLC
                     GQRGVPIDFRSQISFCAVVCQKGMLYHHCSSFCLRSCTSLSSPEQCKEDCAEGCNCPE
                     GKFYEDTLNFCVPIYHCRCHYRGSIYQPGELIPTPSGLCQCSNGTVKCDETATPSTVH
                     ACPEGKEYFDCRFPDPELPAGGINCETTCANMAMNFTCAPSSPCISGCVCAAGMAEHK
                     GKCYVPESCPCIWKDWEYGSGEVITTPCYTCVCRRGMFNCTYYPCPAVCTVYGDRHYH
                     SFDGLEYDYISDCQVFLIKSTDDSGISVISQNKKCFDNDIVCSKSVLISIGDTEIYLN
                     DAPYKQKQSGFFLESKPEYQLWKAGFYIVIYFPEEDITILWDEKTTIHIKVGPKWKNK
                     LAGLCGNFDKCTSNDMTTSNNIEVRNAQVFGDSWALGQCEDLIETLKPCEAHQNKFPY
                     AKRQCSILYSDVFAPCRNVIDVTSFAKNCHEDTCNCNLGGDCECLCTNVAAYAYKCCQ
                     EGVPVHWRSPTVCALDCEYYNQGLGEGPYMLASYGQSGLVLGANITSRSIFSLPRSSD
                     RGNLFFIFMITPGLFKEKTSSLALVSLESAERPNYFLYVHDNDSLSLLLWHASSAFRQ
                     RATFFHHQGLWIPGYSAFELYSKKGYFIVFMDSTVKASKYDDSEEFKQSSSFSIEEIQ
                     AVIPYRRMCEWRYEPCATPCFKTCSDPEALACTFLPPVEGCLPYCPKHMILDEVTLKC
                     VYPEDCIPLTPTEPALVPPDMATPSDMTPTPGLECEPQQFDPVYNCSQYICLNMEWTF
                     YNWSLNCPTDLEMPDCGFRGWPVQVNTDICCPEWECPCRCSMLSELSIITFDGNNAAL
                     SSMASYILVRIPGEIVIVHIDKCSMNQNGHALKKPASFGRISGLCFKKLNVTTSIHKI
                     LINRVARKVDVDSIVVPLPFSSHELFIEDSGTMYVITTPAGLIIKWAHLTGIIDIHFG
                     PQFNLSSYTEGLCGICNDDPDDDLRMQNGTIITNMEDIELFIGSWEIEKSFEVTMRRP
                     VRNCTEYDCSHCIELLNREGFIPCHEKVSPRDFCEKMWINYTYFWSYECDAVSAYVAL
                     CNKFDICIQWRTPDYCPLSCPEGKEYQPCVRPCEARTCLNKWFYGHSSCLNLREDCVC
                     KDGTILHRPDKTLCIPEQECVCTDSEDHPHSAGEIWNGGIDECALYKCLEDGNIIPIE
                     PVCEEEPSPICEREAEVVIGIVDKLTCCSKKVCGCDMTLCDRTIPICTSSQKLIIGYS
                     ALSCCPQYECECDTLRCPSISTPVCRDDQFVLQVRQGEPCCFYPSCVCKTCTELTPQC
                     TDGEFLTVNLNTTHLCCPQYYCVCEPELCPPPLLECAKDMNLVKENVSGQCCPNWHCE
                     CNCENLVTPTCEVGEFATIDQTFQTDCGCVQYLCEKDDVCVFQEVSVLNPGQSLIKYL
                     EEDFCYAIECLDEKDNYTDFHTLNVTMVNCSKDCDVHQIYIPSSSDYDCCGTCKNISC
                     KFHMENGTSVIYEEGSIWNHNCSTYECVNTEEGAMILNYSMVCPPFNETECKLNEGIV
                     KFYNEGCCKICKREERICQKLIIKSIIKKQDCVSQSSISVASCDGKCPSATIYNINVE
                     SHLRFCKCCRENGVRNLTVPLHCSGNGTEVMYTLQEPIDCTCQWN"
ORIGIN      
        1 tcatcattac tgtcttcttt gccatctttc ttactcttcc tttcttctgg ctctgtctct
       61 tggaaacagc aggagagttt ctaacatacg tcctttcttc atcacaacta ggggactgtt
      121 tttaaaaagg aagtggatag tttttaagag tatctgatag ttcaatgcta cctgcttctt
      181 cctgtgccac ggaacaccca aaggggaggg actatactta tttcagtgaa aattagaatt
      241 atggtgactg aacattttgg gatcaatgtg atttatttta ccgtagttaa tattctttta
      301 ttccctttca gtcccaaaca tgggaagtgg cagagatggg atttgtaaaa cctgggggca
      361 gtatcacttt gaaacatttg atggaatcta ctactacgtc ccaggaagct gttcttatat
      421 ctttgcaaag gattgtggta atttggagcc tcagtacaca gtatggttta tctctgcctc
      481 aaacaattgg gcaggtgcac tttgagaagc tagctgacta cattctggtg aaaacgacct
      541 ttggattttc tttggcttgg gatggaatat ctggaattta cctcaaacta tctgaggagc
      601 acagagggaa atcatgtggc ttgtgtgcaa attataatgg cattcagtca gatgactttg
      661 tgattcacca agaggactac acagaagaca ttgctatgtt tgcaaacagt tggctggtgc
      721 taactccaga tgatgctaga tgtgtaccca ctccctcaga ctttccaaat ccgtgttcca
      781 gtggaatgcc agcatttgag gcaatcttct tcaaatgcca gatattgtta cagttcccct
      841 ttctgagctg tcacgaatac attgatccat acttatacat tgccagctgt gttaatgatc
      901 tgtgcaaaac tgatgatgat gaaacttatt gtcgagcagc caccgagtat gctagagcgt
      961 gttcccatgc tggcttcccc attcaagact ggagggatga ctttccagca tgcactgata
     1021 agtgtgacga cagctttgtc caccgggatt gtatcagttg ctgcccaccg agctgcacgt
     1081 ttgacaagca gtgtcttggg agcaatcttc actgccttga cggatgctac tgtgcagatg
     1141 caggcctcat aatggacaat ggaacttgca tctctttgga gagctgcccg tgtagttttc
     1201 atgggttagc ttattcggtt ggctcaaaaa ttgaacaaga gtgcactgag tgtgtatgtg
     1261 ttggtggggt ttggaactgc actgagcatg actgtccagt tcagtgttct gttgtgggtg
     1321 actctcattt taccacgttt gatgggcgcc attattcttt tatcggcttg tgtcagtaca
     1381 tccttgtgaa aggaactggg aaagatagat tcaccatcac gttacagaag gctcactgcg
     1441 aacagaacct gggtttggtc tgccttcagt ccataactct aattctggag gatgacttta
     1501 acaaacaagt aacgctcagt agaggaggcc aaatcctcac cagtcccaac caaggcttca
     1561 ccctgaacgg cgttgtcgaa attcaaactc tgtcatcctt attcattctc ctaagaacca
     1621 ccttcggttt aaagatcttg ttcgctattg atggagaaag aatttacatt cagctttcca
     1681 gtgcctggaa aagaaggacc ttaggtctgt gcggtacctt taatggcaac atcagggatg
     1741 acttcctgtc cccttctggc atgatcgaag gaaccccaca gcttcacgcg catgcgtgga
     1801 gagtttcctc cacgtgtttc gcgcctgtcc atgtcccgat ggtggatccc tgcaatatta
     1861 accaacagaa cattggatat gcagtgcact gtgatgtcat ccaccaggag ctctttgctc
     1921 cttgtcacgt ctacgtcagt ccagggctgt actaccagct gtgtcgacat gacgcgtgca
     1981 agtgcggaag ctcctgcctg tgcaatgctc ttgcccatta tgcctacctg tgtggtcagc
     2041 gcggtgtgcc cattgacttt agatctcaga tctcgttctg tgccgtggtg tgtcaaaagg
     2101 gcatgctgta ccaccactgt tcctcattct gcctccgttc ctgcacctct ctctcctccc
     2161 ctgagcagtg caaagaagat tgtgctgaag gttgtaactg tcctgaaggc aaattctatg
     2221 aagacacact taacttttgt gtgcccatat atcactgccg ctgtcattat agggggagca
     2281 tttatcagcc aggggaactc atcccaacac cctcaggctt atgccagtgt tcaaatggga
     2341 ctgtgaaatg tgatgagaca gcaacgccct ctactgtcca cgcctgccca gaagggaagg
     2401 aatattttga ctgcaggttt cctgaccctg aattaccagc tggtggtata aattgcgaga
     2461 ccacgtgtgc aaacatggcc atgaacttca cctgtgctcc atcctcgcct tgcatcagtg
     2521 gctgcgtttg tgctgcaggg atggctgagc acaaaggaaa atgctatgtt cctgaaagct
     2581 gtccttgcat ctggaaagac tgggaatatg gctcagggga agtcatcact acaccatgtt
     2641 acacctgtgt ttgtcggcga gggatgttca actgcacgta ttatccgtgt cccgcagtgt
     2701 gcaccgtcta tggggaccgg cattaccatt cctttgatgg cttggaatat gactatatca
     2761 gcgactgcca ggtgttcttg ataaagagta cagatgattc tggtatatct gtgatttccc
     2821 agaacaagaa gtgctttgac aatgatattg tttgttctaa aagtgttttg atatcaattg
     2881 gagacactga aatctacctc aacgatgctc cttacaaaca gaagcaatca ggttttttcc
     2941 tggaaagcaa acctgaatac cagctgtgga aggctgggtt ctacatagta atatacttcc
     3001 cagaggaaga tatcaccatt ctgtgggatg agaagacaac catccacatc aaagttgggc
     3061 caaagtggaa gaacaagctg gctggattgt gtggtaactt tgacaaatgt acttcaaatg
     3121 atatgacaac ctctaataac attgaagtgc gaaacgctca ggtgtttggc gacagctggg
     3181 ccttaggaca gtgtgaagat cttattgaga cactgaagcc ctgcgaggca caccaaaaca
     3241 aatttcccta tgccaagaga caatgttcca ttttgtacag tgatgtgttc gctccttgtc
     3301 gcaatgtgat cgacgttact tcctttgcca aaaactgcca tgaagatacg tgtaactgta
     3361 acctgggtgg ggactgtgaa tgcctatgta ccaatgtggc tgcatatgct tacaaatgct
     3421 gccaggaagg ggtgcctgtt cactggaggt cacccaccgt ctgtgccctt gactgtgaat
     3481 attataatca agggcttgga gaaggaccgt acatgctggc aagttatggc caaagtggcc
     3541 ttgttctcgg tgccaatatt accagtagaa gcattttctc tttgccgaga agcagcgatc
     3601 gtgggaattt attttttatt tttatgatca ctccaggcct tttcaaagag aagacatcct
     3661 cattggctct cgtttccttg gaatctgctg aaaggccaaa ctactttctc tacgtccacg
     3721 acaatgactc tcttagcttg ctgctgtggc acgcgagctc ggcatttcgt cagagagcaa
     3781 cgtttttcca ccaccaaggc ctctggattc ctggttacag tgcattcgaa ttatacagca
     3841 agaaaggcta cttcattgtt tttatggatt ctaccgtcaa agcatcgaaa tacgatgatt
     3901 cagaggaatt caagcagtca agtagcttca gcatagaaga aatccaggca gtgatccctt
     3961 acaggaggat gtgtgagtgg agatacgaac cttgtgctac tccttgtttt aaaacatgca
     4021 gtgatccaga agccctagcc tgtacattcc ttccaccggt tgaaggatgt ttaccatatt
     4081 gccccaagca tatgatcctg gatgaggtga ctcttaaatg tgtttatcca gaagactgca
     4141 taccactgac tccaacagaa ccagcgttag tgccaccaga catggctact ccgtcagaca
     4201 tgacaccgac cccaggtttg gaatgtgagc ctcaacaatt tgatcctgtt tataactgta
     4261 gtcaatatat ctgccttaac atggagtgga ccttttacaa ctggtctctg aattgcccga
     4321 cggacttgga aatgccagac tgtgggttcc gaggatggcc tgttcaagtg aacactgata
     4381 tatgctgccc tgagtgggaa tgtccctgtc ggtgctccat gttgtcagag ctgagcatta
     4441 ttacgtttga tggaaacaat gctgcactat ccagcatggc ttcttacatc ttagtgagaa
     4501 tccctgggga aattgtcatt gttcacattg acaagtgttc catgaatcag aatggacatg
     4561 cccttaaaaa accagcttct tttggacgga tctcaggact ttgttttaag aagctaaatg
     4621 tgacaacatc tatacataaa atacttatca acagagtggc aagaaaggta gacgtggatt
     4681 ctattgttgt gcctttgcca ttttcaagtc atgagctgtt catagaagat tctggaacaa
     4741 tgtatgtgat tactactcct gctggcttaa tcataaagtg ggctcacctt acaggaatca
     4801 tagatattca cttcggcccc caatttaact tgtcatctta cacagaaggg ctttgtggga
     4861 tttgcaatga cgatccagat gatgacctca ggatgcagaa tggcacgatc attaccaaca
     4921 tggaagacat agagttattt attgggagct gggaaattga gaaatcattt gaagtgacca
     4981 tgagaagacc tgtgaggaat tgtacggagt atgactgcag ccattgcatt gagttattga
     5041 acagagaagg tttcattcca tgccatgaga aagtctcacc aagggacttc tgtgaaaaga
     5101 tgtggatcaa ctacacctac ttctggagct atgaatgcga tgcggtctct gcatacgtgg
     5161 ctctgtgcaa caagtttgat atctgcattc agtggcgtac acctgactac tgccctctga
     5221 gctgcccaga gggaaaggaa taccagccct gtgtgagacc atgtgaagca agaacgtgtc
     5281 ttaataaatg gttctatgga cattcctctt gtctgaattt gagagaagac tgtgtgtgca
     5341 aggatggaac cattcttcac cggccagata aaactctatg catcccagag caagaatgtg
     5401 tatgcactga cagtgaagat cacccccaca gtgctgggga gatttggaat ggtggcattg
     5461 atgaatgtgc cctctacaaa tgcctggagg atggaaacat tattcctata gagccagtct
     5521 gcgaagaaga accttccccc atctgtgaac gagaagctga agtggtcata ggcattgttg
     5581 ataagctgac ctgctgttct aaaaaagtct gtggttgtga catgactttg tgtgacagga
     5641 ctatcccaat atgcacaagt agccagaagt tgatcattgg ctatagtgct ctttcttgtt
     5701 gcccacagta tgaatgtgaa tgtgatacct tgagatgtcc cagtatttca accccagttt
     5761 gcagagatga ccagtttgtt cttcaagtcc gacaaggaga accttgctgt ttctaccctt
     5821 cctgtgtttg taagacatgc actgaactga ctccacaatg tactgatggg gaattcctca
     5881 cagtgaatct caatactaca catttatgct gtcctcagta ctactgtgtt tgcgagccag
     5941 aactttgtcc cccaccatta ctcgagtgtg caaaagatat gaatctggtg aaagaaaatg
     6001 tatccggaca gtgttgccca aactggcatt gcgaatgcaa ctgtgaaaat cttgtcacgc
     6061 caacttgtga agtgggagaa tttgccacaa tagatcaaac ctttcagact gactgtggat
     6121 gtgtacagta cctctgtgaa aaggatgatg tgtgtgtgtt tcaagaagta tcagtgttga
     6181 atcctggcca atctctaata aagtatttgg aagaggactt ttgttatgca atcgaatgtc
     6241 tggatgaaaa agataactat acagactttc atactttgaa tgttacaatg gtgaactgtt
     6301 ccaaagactg tgatgttcac cagatataca tcccatcctc cagtgattat gattgctgtg
     6361 ggacatgtaa aaatatatcc tgcaaatttc atatggaaaa tggaacatca gttatatatg
     6421 aggagggaag catttggaac cataactgca gcacatacga atgtgttaat actgaggagg
     6481 gggcaatgat tctaaactac agcatggtct gccctccttt taatgaaact gaatgcaaac
     6541 tgaatgaagg cattgtaaag ttttataatg aaggctgttg caagatctgc aaacgagaag
     6601 aaagaatatg ccagaaactg atcattaaat cgatcataaa gaaacaggac tgtgtaagcc
     6661 agagctctat tagtgtggca tcttgtgatg gaaaatgccc atcagctacc atatataaca
     6721 tcaacgtcga aagtcacctg aggttctgca agtgctgtcg tgaaaatgga gtgcggaacc
     6781 tgacggtgcc gctgcactgc tcgggaaatg gcactgaggt tatgtacacc ctccaggagc
     6841 ctatagactg cacgtgccag tggaattga
//
