LOCUS       XM_039080120            6985 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus otogelin-like (Otogl), transcript
            variant X4, mRNA.
ACCESSION   XM_039080120
VERSION     XM_039080120.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080120.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6985
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6985
                     /gene="Otogl"
                     /note="otogelin-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 Protein, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:685868"
                     /db_xref="RGD:1589018"
     CDS             320..6985
                     /gene="Otogl"
                     /codon_start=1
                     /product="otogelin-like protein isoform X4"
                     /protein_id="XP_038936048.1"
                     /db_xref="GeneID:685868"
                     /db_xref="RGD:1589018"
                     /translation="MGSGRDGICKTWGQYHFETFDGIYYYVPGSCSYIFAKDCGNLEP
                     QYTVWVHNSPKCLGSVYSCYRSISLFFSNQEEIRIYGHEIKKNGLSLSLPQTIGQVHF
                     EKLADYILVKTTFGFSLAWDGISGIYLKLSEEHRGKSCGLCANYNGIQSDDFVIHQED
                     YTEDIAMFANSWLVLTPDDARCVPTPSDFPNPCSSGMPAFEAIFFKCQILLQFPFLSC
                     HEYIDPYLYIASCVNDLCKTDDDETYCRAATEYARACSHAGFPIQDWRDDFPACTDKC
                     DDSFVHRDCISCCPPSCTFDKQCLGSNLHCLDGCYCADGLIMDNGTCISLESCPCSFH
                     GLAYSVGSKIEQECTECVCVGGVWNCTEHDCPVQCSVVGDSHFTTFDGRHYSFIGLCQ
                     YILVKGTGKDRFTITLQKAHCEQNLGLVCLQSITLILEDDFNKQVTLSRGGQILTSPN
                     QGFTLNGVVEIQTLSSLFILLRTTFGLKILFAIDGERIYIQLSSAWKRRTLGLCGTFN
                     GNIRDDFLSPSGMIEGTPQLHAHAWRVSSTCFAPVHVPMVDPCNINQQNIGYAVHCDV
                     IHQELFAPCHVYVSPGLYYQLCRHDACKCGSSCLCNALAHYAYLCGQRGVPIDFRSQI
                     SFCAVVCQKGMLYHHCSSFCLRSCTSLSSPEQCKEDCAEGCNCPEGKFYEDTLNFCVP
                     IYHCRCHYRGSIYQPGELIPTPSGLCQCSNGTVKCDETATPSTVHACPEGKEYFDCRF
                     PDPELPAGGINCETTCANMAMNFTCAPSSPCISGCVCAAGMAEHKGKCYVPESCPCIW
                     KDWEYGSGEVITTPCYTCVCRRGMFNCTYYPCPAVCTVYGDRHYHSFDGLEYDYISDC
                     QVFLIKSTDDSGISVISQNKKCFDNDIVCSKSVLISIGDTEIYLNDAPYKQQSGFFLE
                     SKPEYQLWKAGFYIVIYFPEEDITILWDEKTTIHIKVGPKWKNKLAGLCGNFDKCTSN
                     DMTTSNNIEVRNAQVFGDSWALGQCEDLIETLKPCEAHQNKFPYAKRQCSILYSDVFA
                     PCRNVIDVTSFAKNCHEDTCNCNLGGDCECLCTNVAAYAYKCCQEGVPVHWRSPTVCA
                     LDCEYYNQGLGEGPYMLASYGQSGLVLGANITSRSIFSLPRSSDRGNLFFIFMITPGL
                     FKEKTSSLALVSLESAERPNYFLYVHDNDSLSLLLWHASSAFRQRATFFHHQGLWIPG
                     YSAFELYSKKGYFIVFMDSTVKASKYDDSEEFKQSSSFSIEEIQAVIPYRRMCEWRYE
                     PCATPCFKTCSDPEALACTFLPPVEGCLPYCPKHMILDEVTLKCVYPEDCIPLTPTEP
                     ALVPPDMATPSDMTPTPGLECEPQQFDPVYNCSQYICLNMEWTFYNWSLNCPTDLEMP
                     DCGFRGWPVQVNTDICCPEWECPCRCSMLSELSIITFDGNNAALSSMASYILVRIPGE
                     IVIVHIDKCSMNQNGHALKKPASFGRISGLCFKKLNVTTSIHKILINRVARKVDVDSI
                     VVPLPFSSHELFIEDSGTMYVITTPAGLIIKWAHLTGIIDIHFGPQFNLSSYTEGLCG
                     ICNDDPDDDLRMQNGTIITNMEDIELFIGSWEIEKSFEVTMRRPVRNCTEYDCSHCIE
                     LLNREGFIPCHEKVSPRDFCEKMWINYTYFWSYECDAVSAYVALCNKFDICIQWRTPD
                     YCPLSCPEGKEYQPCVRPCEARTCLNKWFYGHSSCLNLREDCVCKDGTILHRPDKTLC
                     IPEQECVCTDSEDHPHSAGEIWNGGIDECALYKCLEDGNIIPIEPVCEEEPSPICERE
                     AEVVIGIVDKLTCCSKKVCGCDMTLCDRTIPICTSSQKLIIGYSALSCCPQYECECDT
                     LRCPSISTPVCRDDQFVLQVRQGEPCCFYPSCVCKTCTELTPQCTDGEFLTVNLNTTH
                     LCCPQYYCVCEPELCPPPLLECAKDMNLVKENVSGQCCPNWHCECNCENLVTPTCEVG
                     EFATIDQTFQTDCGCVQYLCEKDDVCVFQEVSVLNPGQSLIKYLEEDFCYAIECLDEK
                     DNYTDFHTLNVTMVNCSKDCDVHQIYIPSSSDYDCCGTCKNISCKFHMENGTSVIYEE
                     GSIWNHNCSTYECVNTEEGAMILNYSMVCPPFNETECKLNEGIVKFYNEGCCKICKRE
                     ERICQKLIIKSIIKKQDCVSQSSISVASCDGKCPSATIYNINVESHLRFCKCCRENGV
                     RNLTVPLHCSGNGTEVMYTLQEPIDCTCQWN"
ORIGIN      
        1 tcatcattac tgtcttcttt gccatctttc ttactcttcc tttcttctgg ctctgtctct
       61 tggaaacagc aggagagttt ctaacatacg tcctttcttc atcacaacta ggggactgtt
      121 tttaaaaagg aagtggatag tttttaagag tatctgatag ttcaatgcta cctgcttctt
      181 cctgtgccac ggaacaccca aaggggaggg actatactta tttcagtgaa aattagaatt
      241 atggtgactg aacattttgg gatcaatgtg atttatttta ccgtagttaa tattctttta
      301 ttccctttca gtcccaaaca tgggaagtgg cagagatggg atttgtaaaa cctgggggca
      361 gtatcacttt gaaacatttg atggaatcta ctactacgtc ccaggaagct gttcttatat
      421 ctttgcaaag gattgtggta atttggagcc tcagtacaca gtatgggtcc ataacagccc
      481 aaagtgcctt ggttctgtgt attcttgtta tcgctcgatc agcttatttt tttcaaacca
      541 agaggaaatt agaatctatg gacatgaaat aaagaagaat gggctcagtt tatctctgcc
      601 tcaaacaatt gggcaggtgc actttgagaa gctagctgac tacattctgg tgaaaacgac
      661 ctttggattt tctttggctt gggatggaat atctggaatt tacctcaaac tatctgagga
      721 gcacagaggg aaatcatgtg gcttgtgtgc aaattataat ggcattcagt cagatgactt
      781 tgtgattcac caagaggact acacagaaga cattgctatg tttgcaaaca gttggctggt
      841 gctaactcca gatgatgcta gatgtgtacc cactccctca gactttccaa atccgtgttc
      901 cagtggaatg ccagcatttg aggcaatctt cttcaaatgc cagatattgt tacagttccc
      961 ctttctgagc tgtcacgaat acattgatcc atacttatac attgccagct gtgttaatga
     1021 tctgtgcaaa actgatgatg atgaaactta ttgtcgagca gccaccgagt atgctagagc
     1081 gtgttcccat gctggcttcc ccattcaaga ctggagggat gactttccag catgcactga
     1141 taagtgtgac gacagctttg tccaccggga ttgtatcagt tgctgcccac cgagctgcac
     1201 gtttgacaag cagtgtcttg ggagcaatct tcactgcctt gacggatgct actgtgcaga
     1261 tggcctcata atggacaatg gaacttgcat ctctttggag agctgcccgt gtagttttca
     1321 tgggttagct tattcggttg gctcaaaaat tgaacaagag tgcactgagt gtgtatgtgt
     1381 tggtggggtt tggaactgca ctgagcatga ctgtccagtt cagtgttctg ttgtgggtga
     1441 ctctcatttt accacgtttg atgggcgcca ttattctttt atcggcttgt gtcagtacat
     1501 ccttgtgaaa ggaactggga aagatagatt caccatcacg ttacagaagg ctcactgcga
     1561 acagaacctg ggtttggtct gccttcagtc cataactcta attctggagg atgactttaa
     1621 caaacaagta acgctcagta gaggaggcca aatcctcacc agtcccaacc aaggcttcac
     1681 cctgaacggc gttgtcgaaa ttcaaactct gtcatcctta ttcattctcc taagaaccac
     1741 cttcggttta aagatcttgt tcgctattga tggagaaaga atttacattc agctttccag
     1801 tgcctggaaa agaaggacct taggtctgtg cggtaccttt aatggcaaca tcagggatga
     1861 cttcctgtcc ccttctggca tgatcgaagg aaccccacag cttcacgcgc atgcgtggag
     1921 agtttcctcc acgtgtttcg cgcctgtcca tgtcccgatg gtggatccct gcaatattaa
     1981 ccaacagaac attggatatg cagtgcactg tgatgtcatc caccaggagc tctttgctcc
     2041 ttgtcacgtc tacgtcagtc cagggctgta ctaccagctg tgtcgacatg acgcgtgcaa
     2101 gtgcggaagc tcctgcctgt gcaatgctct tgcccattat gcctacctgt gtggtcagcg
     2161 cggtgtgccc attgacttta gatctcagat ctcgttctgt gccgtggtgt gtcaaaaggg
     2221 catgctgtac caccactgtt cctcattctg cctccgttcc tgcacctctc tctcctcccc
     2281 tgagcagtgc aaagaagatt gtgctgaagg ttgtaactgt cctgaaggca aattctatga
     2341 agacacactt aacttttgtg tgcccatata tcactgccgc tgtcattata gggggagcat
     2401 ttatcagcca ggggaactca tcccaacacc ctcaggctta tgccagtgtt caaatgggac
     2461 tgtgaaatgt gatgagacag caacgccctc tactgtccac gcctgcccag aagggaagga
     2521 atattttgac tgcaggtttc ctgaccctga attaccagct ggtggtataa attgcgagac
     2581 cacgtgtgca aacatggcca tgaacttcac ctgtgctcca tcctcgcctt gcatcagtgg
     2641 ctgcgtttgt gctgcaggga tggctgagca caaaggaaaa tgctatgttc ctgaaagctg
     2701 tccttgcatc tggaaagact gggaatatgg ctcaggggaa gtcatcacta caccatgtta
     2761 cacctgtgtt tgtcggcgag ggatgttcaa ctgcacgtat tatccgtgtc ccgcagtgtg
     2821 caccgtctat ggggaccggc attaccattc ctttgatggc ttggaatatg actatatcag
     2881 cgactgccag gtgttcttga taaagagtac agatgattct ggtatatctg tgatttccca
     2941 gaacaagaag tgctttgaca atgatattgt ttgttctaaa agtgttttga tatcaattgg
     3001 agacactgaa atctacctca acgatgctcc ttacaaacag caatcaggtt ttttcctgga
     3061 aagcaaacct gaataccagc tgtggaaggc tgggttctac atagtaatat acttcccaga
     3121 ggaagatatc accattctgt gggatgagaa gacaaccatc cacatcaaag ttgggccaaa
     3181 gtggaagaac aagctggctg gattgtgtgg taactttgac aaatgtactt caaatgatat
     3241 gacaacctct aataacattg aagtgcgaaa cgctcaggtg tttggcgaca gctgggcctt
     3301 aggacagtgt gaagatctta ttgagacact gaagccctgc gaggcacacc aaaacaaatt
     3361 tccctatgcc aagagacaat gttccatttt gtacagtgat gtgttcgctc cttgtcgcaa
     3421 tgtgatcgac gttacttcct ttgccaaaaa ctgccatgaa gatacgtgta actgtaacct
     3481 gggtggggac tgtgaatgcc tatgtaccaa tgtggctgca tatgcttaca aatgctgcca
     3541 ggaaggggtg cctgttcact ggaggtcacc caccgtctgt gcccttgact gtgaatatta
     3601 taatcaaggg cttggagaag gaccgtacat gctggcaagt tatggccaaa gtggccttgt
     3661 tctcggtgcc aatattacca gtagaagcat tttctctttg ccgagaagca gcgatcgtgg
     3721 gaatttattt tttattttta tgatcactcc aggccttttc aaagagaaga catcctcatt
     3781 ggctctcgtt tccttggaat ctgctgaaag gccaaactac tttctctacg tccacgacaa
     3841 tgactctctt agcttgctgc tgtggcacgc gagctcggca tttcgtcaga gagcaacgtt
     3901 tttccaccac caaggcctct ggattcctgg ttacagtgca ttcgaattat acagcaagaa
     3961 aggctacttc attgttttta tggattctac cgtcaaagca tcgaaatacg atgattcaga
     4021 ggaattcaag cagtcaagta gcttcagcat agaagaaatc caggcagtga tcccttacag
     4081 gaggatgtgt gagtggagat acgaaccttg tgctactcct tgttttaaaa catgcagtga
     4141 tccagaagcc ctagcctgta cattccttcc accggttgaa ggatgtttac catattgccc
     4201 caagcatatg atcctggatg aggtgactct taaatgtgtt tatccagaag actgcatacc
     4261 actgactcca acagaaccag cgttagtgcc accagacatg gctactccgt cagacatgac
     4321 accgacccca ggtttggaat gtgagcctca acaatttgat cctgtttata actgtagtca
     4381 atatatctgc cttaacatgg agtggacctt ttacaactgg tctctgaatt gcccgacgga
     4441 cttggaaatg ccagactgtg ggttccgagg atggcctgtt caagtgaaca ctgatatatg
     4501 ctgccctgag tgggaatgtc cctgtcggtg ctccatgttg tcagagctga gcattattac
     4561 gtttgatgga aacaatgctg cactatccag catggcttct tacatcttag tgagaatccc
     4621 tggggaaatt gtcattgttc acattgacaa gtgttccatg aatcagaatg gacatgccct
     4681 taaaaaacca gcttcttttg gacggatctc aggactttgt tttaagaagc taaatgtgac
     4741 aacatctata cataaaatac ttatcaacag agtggcaaga aaggtagacg tggattctat
     4801 tgttgtgcct ttgccatttt caagtcatga gctgttcata gaagattctg gaacaatgta
     4861 tgtgattact actcctgctg gcttaatcat aaagtgggct caccttacag gaatcataga
     4921 tattcacttc ggcccccaat ttaacttgtc atcttacaca gaagggcttt gtgggatttg
     4981 caatgacgat ccagatgatg acctcaggat gcagaatggc acgatcatta ccaacatgga
     5041 agacatagag ttatttattg ggagctggga aattgagaaa tcatttgaag tgaccatgag
     5101 aagacctgtg aggaattgta cggagtatga ctgcagccat tgcattgagt tattgaacag
     5161 agaaggtttc attccatgcc atgagaaagt ctcaccaagg gacttctgtg aaaagatgtg
     5221 gatcaactac acctacttct ggagctatga atgcgatgcg gtctctgcat acgtggctct
     5281 gtgcaacaag tttgatatct gcattcagtg gcgtacacct gactactgcc ctctgagctg
     5341 cccagaggga aaggaatacc agccctgtgt gagaccatgt gaagcaagaa cgtgtcttaa
     5401 taaatggttc tatggacatt cctcttgtct gaatttgaga gaagactgtg tgtgcaagga
     5461 tggaaccatt cttcaccggc cagataaaac tctatgcatc ccagagcaag aatgtgtatg
     5521 cactgacagt gaagatcacc cccacagtgc tggggagatt tggaatggtg gcattgatga
     5581 atgtgccctc tacaaatgcc tggaggatgg aaacattatt cctatagagc cagtctgcga
     5641 agaagaacct tcccccatct gtgaacgaga agctgaagtg gtcataggca ttgttgataa
     5701 gctgacctgc tgttctaaaa aagtctgtgg ttgtgacatg actttgtgtg acaggactat
     5761 cccaatatgc acaagtagcc agaagttgat cattggctat agtgctcttt cttgttgccc
     5821 acagtatgaa tgtgaatgtg ataccttgag atgtcccagt atttcaaccc cagtttgcag
     5881 agatgaccag tttgttcttc aagtccgaca aggagaacct tgctgtttct acccttcctg
     5941 tgtttgtaag acatgcactg aactgactcc acaatgtact gatggggaat tcctcacagt
     6001 gaatctcaat actacacatt tatgctgtcc tcagtactac tgtgtttgcg agccagaact
     6061 ttgtccccca ccattactcg agtgtgcaaa agatatgaat ctggtgaaag aaaatgtatc
     6121 cggacagtgt tgcccaaact ggcattgcga atgcaactgt gaaaatcttg tcacgccaac
     6181 ttgtgaagtg ggagaatttg ccacaataga tcaaaccttt cagactgact gtggatgtgt
     6241 acagtacctc tgtgaaaagg atgatgtgtg tgtgtttcaa gaagtatcag tgttgaatcc
     6301 tggccaatct ctaataaagt atttggaaga ggacttttgt tatgcaatcg aatgtctgga
     6361 tgaaaaagat aactatacag actttcatac tttgaatgtt acaatggtga actgttccaa
     6421 agactgtgat gttcaccaga tatacatccc atcctccagt gattatgatt gctgtgggac
     6481 atgtaaaaat atatcctgca aatttcatat ggaaaatgga acatcagtta tatatgagga
     6541 gggaagcatt tggaaccata actgcagcac atacgaatgt gttaatactg aggagggggc
     6601 aatgattcta aactacagca tggtctgccc tccttttaat gaaactgaat gcaaactgaa
     6661 tgaaggcatt gtaaagtttt ataatgaagg ctgttgcaag atctgcaaac gagaagaaag
     6721 aatatgccag aaactgatca ttaaatcgat cataaagaaa caggactgtg taagccagag
     6781 ctctattagt gtggcatctt gtgatggaaa atgcccatca gctaccatat ataacatcaa
     6841 cgtcgaaagt cacctgaggt tctgcaagtg ctgtcgtgaa aatggagtgc ggaacctgac
     6901 ggtgccgctg cactgctcgg gaaatggcac tgaggttatg tacaccctcc aggagcctat
     6961 agactgcacg tgccagtgga attga
//
