LOCUS       XM_039080118            6988 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus otogelin-like (Otogl), transcript
            variant X2, mRNA.
ACCESSION   XM_039080118
VERSION     XM_039080118.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080118.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6988
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6988
                     /gene="Otogl"
                     /note="otogelin-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 Protein, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:685868"
                     /db_xref="RGD:1589018"
     CDS             320..6988
                     /gene="Otogl"
                     /codon_start=1
                     /product="otogelin-like protein isoform X2"
                     /protein_id="XP_038936046.1"
                     /db_xref="GeneID:685868"
                     /db_xref="RGD:1589018"
                     /translation="MGSGRDGICKTWGQYHFETFDGIYYYVPGSCSYIFAKDCGNLEP
                     QYTVWVHNSPKCLGSVYSCYRSISLFFSNQEEIRIYGHEIKKNGLSLSLPQTIGQVHF
                     EKLADYILVKTTFGFSLAWDGISGIYLKLSEEHRGKSCGLCANYNGIQSDDFVIHQED
                     YTEDIAMFANSWLVLTPDDARCVPTPSDFPNPCSSGMPAFEAIFFKCQILLQFPFLSC
                     HEYIDPYLYIASCVNDLCKTDDDETYCRAATEYARACSHAGFPIQDWRDDFPACTDKC
                     DDSFVHRDCISCCPPSCTFDKQCLGSNLHCLDGCYCADGLIMDNGTCISLESCPCSFH
                     GLAYSVGSKIEQECTECVCVGGVWNCTEHDCPVQCSVVGDSHFTTFDGRHYSFIGLCQ
                     YILVKGTGKDRFTITLQKAHCEQNLGLVCLQSITLILEDDFNKQVTLSRGGQILTSPN
                     QGFTLNGVVEIQTLSSLFILLRTTFGLKILFAIDGERIYIQLSSAWKRRTLGLCGTFN
                     GNIRDDFLSPSGMIEGTPQLHAHAWRVSSTCFAPVHVPMVDPCNINQQNIGYAVHCDV
                     IHQELFAPCHVYVSPGLYYQLCRHDACKCGSSCLCNALAHYAYLCGQRGVPIDFRSQI
                     SFCAVVCQKGMLYHHCSSFCLRSCTSLSSPEQCKEDCAEGCNCPEGKFYEDTLNFCVP
                     IYHCRCHYRGSIYQPGELIPTPSGLCQCSNGTVKCDETATPSTVHACPEGKEYFDCRF
                     PDPELPAGGINCETTCANMAMNFTCAPSSPCISGCVCAAGMAEHKGKCYVPESCPCIW
                     KDWEYGSGEVITTPCYTCVCRRGMFNCTYYPCPAVCTVYGDRHYHSFDGLEYDYISDC
                     QVFLIKSTDDSGISVISQNKKCFDNDIVCSKSVLISIGDTEIYLNDAPYKQKQSGFFL
                     ESKPEYQLWKAGFYIVIYFPEEDITILWDEKTTIHIKVGPKWKNKLAGLCGNFDKCTS
                     NDMTTSNNIEVRNAQVFGDSWALGQCEDLIETLKPCEAHQNKFPYAKRQCSILYSDVF
                     APCRNVIDVTSFAKNCHEDTCNCNLGGDCECLCTNVAAYAYKCCQEGVPVHWRSPTVC
                     ALDCEYYNQGLGEGPYMLASYGQSGLVLGANITSRSIFSLPRSSDRGNLFFIFMITPG
                     LFKEKTSSLALVSLESAERPNYFLYVHDNDSLSLLLWHASSAFRQRATFFHHQGLWIP
                     GYSAFELYSKKGYFIVFMDSTVKASKYDDSEEFKQSSSFSIEEIQAVIPYRRMCEWRY
                     EPCATPCFKTCSDPEALACTFLPPVEGCLPYCPKHMILDEVTLKCVYPEDCIPLTPTE
                     PALVPPDMATPSDMTPTPGLECEPQQFDPVYNCSQYICLNMEWTFYNWSLNCPTDLEM
                     PDCGFRGWPVQVNTDICCPEWECPCRCSMLSELSIITFDGNNAALSSMASYILVRIPG
                     EIVIVHIDKCSMNQNGHALKKPASFGRISGLCFKKLNVTTSIHKILINRVARKVDVDS
                     IVVPLPFSSHELFIEDSGTMYVITTPAGLIIKWAHLTGIIDIHFGPQFNLSSYTEGLC
                     GICNDDPDDDLRMQNGTIITNMEDIELFIGSWEIEKSFEVTMRRPVRNCTEYDCSHCI
                     ELLNREGFIPCHEKVSPRDFCEKMWINYTYFWSYECDAVSAYVALCNKFDICIQWRTP
                     DYCPLSCPEGKEYQPCVRPCEARTCLNKWFYGHSSCLNLREDCVCKDGTILHRPDKTL
                     CIPEQECVCTDSEDHPHSAGEIWNGGIDECALYKCLEDGNIIPIEPVCEEEPSPICER
                     EAEVVIGIVDKLTCCSKKVCGCDMTLCDRTIPICTSSQKLIIGYSALSCCPQYECECD
                     TLRCPSISTPVCRDDQFVLQVRQGEPCCFYPSCVCKTCTELTPQCTDGEFLTVNLNTT
                     HLCCPQYYCVCEPELCPPPLLECAKDMNLVKENVSGQCCPNWHCECNCENLVTPTCEV
                     GEFATIDQTFQTDCGCVQYLCEKDDVCVFQEVSVLNPGQSLIKYLEEDFCYAIECLDE
                     KDNYTDFHTLNVTMVNCSKDCDVHQIYIPSSSDYDCCGTCKNISCKFHMENGTSVIYE
                     EGSIWNHNCSTYECVNTEEGAMILNYSMVCPPFNETECKLNEGIVKFYNEGCCKICKR
                     EERICQKLIIKSIIKKQDCVSQSSISVASCDGKCPSATIYNINVESHLRFCKCCRENG
                     VRNLTVPLHCSGNGTEVMYTLQEPIDCTCQWN"
ORIGIN      
        1 tcatcattac tgtcttcttt gccatctttc ttactcttcc tttcttctgg ctctgtctct
       61 tggaaacagc aggagagttt ctaacatacg tcctttcttc atcacaacta ggggactgtt
      121 tttaaaaagg aagtggatag tttttaagag tatctgatag ttcaatgcta cctgcttctt
      181 cctgtgccac ggaacaccca aaggggaggg actatactta tttcagtgaa aattagaatt
      241 atggtgactg aacattttgg gatcaatgtg atttatttta ccgtagttaa tattctttta
      301 ttccctttca gtcccaaaca tgggaagtgg cagagatggg atttgtaaaa cctgggggca
      361 gtatcacttt gaaacatttg atggaatcta ctactacgtc ccaggaagct gttcttatat
      421 ctttgcaaag gattgtggta atttggagcc tcagtacaca gtatgggtcc ataacagccc
      481 aaagtgcctt ggttctgtgt attcttgtta tcgctcgatc agcttatttt tttcaaacca
      541 agaggaaatt agaatctatg gacatgaaat aaagaagaat gggctcagtt tatctctgcc
      601 tcaaacaatt gggcaggtgc actttgagaa gctagctgac tacattctgg tgaaaacgac
      661 ctttggattt tctttggctt gggatggaat atctggaatt tacctcaaac tatctgagga
      721 gcacagaggg aaatcatgtg gcttgtgtgc aaattataat ggcattcagt cagatgactt
      781 tgtgattcac caagaggact acacagaaga cattgctatg tttgcaaaca gttggctggt
      841 gctaactcca gatgatgcta gatgtgtacc cactccctca gactttccaa atccgtgttc
      901 cagtggaatg ccagcatttg aggcaatctt cttcaaatgc cagatattgt tacagttccc
      961 ctttctgagc tgtcacgaat acattgatcc atacttatac attgccagct gtgttaatga
     1021 tctgtgcaaa actgatgatg atgaaactta ttgtcgagca gccaccgagt atgctagagc
     1081 gtgttcccat gctggcttcc ccattcaaga ctggagggat gactttccag catgcactga
     1141 taagtgtgac gacagctttg tccaccggga ttgtatcagt tgctgcccac cgagctgcac
     1201 gtttgacaag cagtgtcttg ggagcaatct tcactgcctt gacggatgct actgtgcaga
     1261 tggcctcata atggacaatg gaacttgcat ctctttggag agctgcccgt gtagttttca
     1321 tgggttagct tattcggttg gctcaaaaat tgaacaagag tgcactgagt gtgtatgtgt
     1381 tggtggggtt tggaactgca ctgagcatga ctgtccagtt cagtgttctg ttgtgggtga
     1441 ctctcatttt accacgtttg atgggcgcca ttattctttt atcggcttgt gtcagtacat
     1501 ccttgtgaaa ggaactggga aagatagatt caccatcacg ttacagaagg ctcactgcga
     1561 acagaacctg ggtttggtct gccttcagtc cataactcta attctggagg atgactttaa
     1621 caaacaagta acgctcagta gaggaggcca aatcctcacc agtcccaacc aaggcttcac
     1681 cctgaacggc gttgtcgaaa ttcaaactct gtcatcctta ttcattctcc taagaaccac
     1741 cttcggttta aagatcttgt tcgctattga tggagaaaga atttacattc agctttccag
     1801 tgcctggaaa agaaggacct taggtctgtg cggtaccttt aatggcaaca tcagggatga
     1861 cttcctgtcc ccttctggca tgatcgaagg aaccccacag cttcacgcgc atgcgtggag
     1921 agtttcctcc acgtgtttcg cgcctgtcca tgtcccgatg gtggatccct gcaatattaa
     1981 ccaacagaac attggatatg cagtgcactg tgatgtcatc caccaggagc tctttgctcc
     2041 ttgtcacgtc tacgtcagtc cagggctgta ctaccagctg tgtcgacatg acgcgtgcaa
     2101 gtgcggaagc tcctgcctgt gcaatgctct tgcccattat gcctacctgt gtggtcagcg
     2161 cggtgtgccc attgacttta gatctcagat ctcgttctgt gccgtggtgt gtcaaaaggg
     2221 catgctgtac caccactgtt cctcattctg cctccgttcc tgcacctctc tctcctcccc
     2281 tgagcagtgc aaagaagatt gtgctgaagg ttgtaactgt cctgaaggca aattctatga
     2341 agacacactt aacttttgtg tgcccatata tcactgccgc tgtcattata gggggagcat
     2401 ttatcagcca ggggaactca tcccaacacc ctcaggctta tgccagtgtt caaatgggac
     2461 tgtgaaatgt gatgagacag caacgccctc tactgtccac gcctgcccag aagggaagga
     2521 atattttgac tgcaggtttc ctgaccctga attaccagct ggtggtataa attgcgagac
     2581 cacgtgtgca aacatggcca tgaacttcac ctgtgctcca tcctcgcctt gcatcagtgg
     2641 ctgcgtttgt gctgcaggga tggctgagca caaaggaaaa tgctatgttc ctgaaagctg
     2701 tccttgcatc tggaaagact gggaatatgg ctcaggggaa gtcatcacta caccatgtta
     2761 cacctgtgtt tgtcggcgag ggatgttcaa ctgcacgtat tatccgtgtc ccgcagtgtg
     2821 caccgtctat ggggaccggc attaccattc ctttgatggc ttggaatatg actatatcag
     2881 cgactgccag gtgttcttga taaagagtac agatgattct ggtatatctg tgatttccca
     2941 gaacaagaag tgctttgaca atgatattgt ttgttctaaa agtgttttga tatcaattgg
     3001 agacactgaa atctacctca acgatgctcc ttacaaacag aagcaatcag gttttttcct
     3061 ggaaagcaaa cctgaatacc agctgtggaa ggctgggttc tacatagtaa tatacttccc
     3121 agaggaagat atcaccattc tgtgggatga gaagacaacc atccacatca aagttgggcc
     3181 aaagtggaag aacaagctgg ctggattgtg tggtaacttt gacaaatgta cttcaaatga
     3241 tatgacaacc tctaataaca ttgaagtgcg aaacgctcag gtgtttggcg acagctgggc
     3301 cttaggacag tgtgaagatc ttattgagac actgaagccc tgcgaggcac accaaaacaa
     3361 atttccctat gccaagagac aatgttccat tttgtacagt gatgtgttcg ctccttgtcg
     3421 caatgtgatc gacgttactt cctttgccaa aaactgccat gaagatacgt gtaactgtaa
     3481 cctgggtggg gactgtgaat gcctatgtac caatgtggct gcatatgctt acaaatgctg
     3541 ccaggaaggg gtgcctgttc actggaggtc acccaccgtc tgtgcccttg actgtgaata
     3601 ttataatcaa gggcttggag aaggaccgta catgctggca agttatggcc aaagtggcct
     3661 tgttctcggt gccaatatta ccagtagaag cattttctct ttgccgagaa gcagcgatcg
     3721 tgggaattta ttttttattt ttatgatcac tccaggcctt ttcaaagaga agacatcctc
     3781 attggctctc gtttccttgg aatctgctga aaggccaaac tactttctct acgtccacga
     3841 caatgactct cttagcttgc tgctgtggca cgcgagctcg gcatttcgtc agagagcaac
     3901 gtttttccac caccaaggcc tctggattcc tggttacagt gcattcgaat tatacagcaa
     3961 gaaaggctac ttcattgttt ttatggattc taccgtcaaa gcatcgaaat acgatgattc
     4021 agaggaattc aagcagtcaa gtagcttcag catagaagaa atccaggcag tgatccctta
     4081 caggaggatg tgtgagtgga gatacgaacc ttgtgctact ccttgtttta aaacatgcag
     4141 tgatccagaa gccctagcct gtacattcct tccaccggtt gaaggatgtt taccatattg
     4201 ccccaagcat atgatcctgg atgaggtgac tcttaaatgt gtttatccag aagactgcat
     4261 accactgact ccaacagaac cagcgttagt gccaccagac atggctactc cgtcagacat
     4321 gacaccgacc ccaggtttgg aatgtgagcc tcaacaattt gatcctgttt ataactgtag
     4381 tcaatatatc tgccttaaca tggagtggac cttttacaac tggtctctga attgcccgac
     4441 ggacttggaa atgccagact gtgggttccg aggatggcct gttcaagtga acactgatat
     4501 atgctgccct gagtgggaat gtccctgtcg gtgctccatg ttgtcagagc tgagcattat
     4561 tacgtttgat ggaaacaatg ctgcactatc cagcatggct tcttacatct tagtgagaat
     4621 ccctggggaa attgtcattg ttcacattga caagtgttcc atgaatcaga atggacatgc
     4681 ccttaaaaaa ccagcttctt ttggacggat ctcaggactt tgttttaaga agctaaatgt
     4741 gacaacatct atacataaaa tacttatcaa cagagtggca agaaaggtag acgtggattc
     4801 tattgttgtg cctttgccat tttcaagtca tgagctgttc atagaagatt ctggaacaat
     4861 gtatgtgatt actactcctg ctggcttaat cataaagtgg gctcacctta caggaatcat
     4921 agatattcac ttcggccccc aatttaactt gtcatcttac acagaagggc tttgtgggat
     4981 ttgcaatgac gatccagatg atgacctcag gatgcagaat ggcacgatca ttaccaacat
     5041 ggaagacata gagttattta ttgggagctg ggaaattgag aaatcatttg aagtgaccat
     5101 gagaagacct gtgaggaatt gtacggagta tgactgcagc cattgcattg agttattgaa
     5161 cagagaaggt ttcattccat gccatgagaa agtctcacca agggacttct gtgaaaagat
     5221 gtggatcaac tacacctact tctggagcta tgaatgcgat gcggtctctg catacgtggc
     5281 tctgtgcaac aagtttgata tctgcattca gtggcgtaca cctgactact gccctctgag
     5341 ctgcccagag ggaaaggaat accagccctg tgtgagacca tgtgaagcaa gaacgtgtct
     5401 taataaatgg ttctatggac attcctcttg tctgaatttg agagaagact gtgtgtgcaa
     5461 ggatggaacc attcttcacc ggccagataa aactctatgc atcccagagc aagaatgtgt
     5521 atgcactgac agtgaagatc acccccacag tgctggggag atttggaatg gtggcattga
     5581 tgaatgtgcc ctctacaaat gcctggagga tggaaacatt attcctatag agccagtctg
     5641 cgaagaagaa ccttccccca tctgtgaacg agaagctgaa gtggtcatag gcattgttga
     5701 taagctgacc tgctgttcta aaaaagtctg tggttgtgac atgactttgt gtgacaggac
     5761 tatcccaata tgcacaagta gccagaagtt gatcattggc tatagtgctc tttcttgttg
     5821 cccacagtat gaatgtgaat gtgatacctt gagatgtccc agtatttcaa ccccagtttg
     5881 cagagatgac cagtttgttc ttcaagtccg acaaggagaa ccttgctgtt tctacccttc
     5941 ctgtgtttgt aagacatgca ctgaactgac tccacaatgt actgatgggg aattcctcac
     6001 agtgaatctc aatactacac atttatgctg tcctcagtac tactgtgttt gcgagccaga
     6061 actttgtccc ccaccattac tcgagtgtgc aaaagatatg aatctggtga aagaaaatgt
     6121 atccggacag tgttgcccaa actggcattg cgaatgcaac tgtgaaaatc ttgtcacgcc
     6181 aacttgtgaa gtgggagaat ttgccacaat agatcaaacc tttcagactg actgtggatg
     6241 tgtacagtac ctctgtgaaa aggatgatgt gtgtgtgttt caagaagtat cagtgttgaa
     6301 tcctggccaa tctctaataa agtatttgga agaggacttt tgttatgcaa tcgaatgtct
     6361 ggatgaaaaa gataactata cagactttca tactttgaat gttacaatgg tgaactgttc
     6421 caaagactgt gatgttcacc agatatacat cccatcctcc agtgattatg attgctgtgg
     6481 gacatgtaaa aatatatcct gcaaatttca tatggaaaat ggaacatcag ttatatatga
     6541 ggagggaagc atttggaacc ataactgcag cacatacgaa tgtgttaata ctgaggaggg
     6601 ggcaatgatt ctaaactaca gcatggtctg ccctcctttt aatgaaactg aatgcaaact
     6661 gaatgaaggc attgtaaagt tttataatga aggctgttgc aagatctgca aacgagaaga
     6721 aagaatatgc cagaaactga tcattaaatc gatcataaag aaacaggact gtgtaagcca
     6781 gagctctatt agtgtggcat cttgtgatgg aaaatgccca tcagctacca tatataacat
     6841 caacgtcgaa agtcacctga ggttctgcaa gtgctgtcgt gaaaatggag tgcggaacct
     6901 gacggtgccg ctgcactgct cgggaaatgg cactgaggtt atgtacaccc tccaggagcc
     6961 tatagactgc acgtgccagt ggaattga
//
