LOCUS       XM_006230180            3576 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus otoancorin (Otoa), mRNA.
ACCESSION   XM_006230180
VERSION     XM_006230180.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006230180.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006230180.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3576
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3576
                     /gene="Otoa"
                     /note="otoancorin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 EST, 5 Proteins, and
                     71% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:499260"
                     /db_xref="RGD:1562741"
     CDS             1..3414
                     /gene="Otoa"
                     /codon_start=1
                     /product="otoancorin"
                     /protein_id="XP_006230242.1"
                     /db_xref="GeneID:499260"
                     /db_xref="RGD:1562741"
                     /translation="MSQEPRMYSLLLVLFLSHGGACQREPSSRQDLHPLLQKMAEEII
                     EGSYLNALLDLALFESSHVWTADLSHRVLAYLNSRNVAFTIPSLQAVMETHLEQYLYQ
                     PQKLLEDLRATDAQQFHTAMKCLLEDKWGHLDLEDIVINLGDIRDEALQSPGVNRSLF
                     LITLERCFQVLNALECVEVLGKVLRGSSGSFLQPDITDRLPQDLHEDAFKNLSAVFKD
                     LYDQTSAHTQRALYSWMTGILRTPFNVTDGSISWVSAEKLWILGRYMVHLSFEEIMNI
                     SPIEIGLFISYDNATKQLDMVYDVTPELAQAFLERIRGSSFDMRNISTIHRLGLLVCF
                     YDGLELLDAALAQVLLHQMLKCSRLRGFQAGVQKLKANLLDIATENQTLNETLGSLSD
                     AVVGLTSTQLESLSSDAVHSAISTLNQVTGWGRSQIVILSAKYLAQEKVLSFYSVSQM
                     GVLLAGVGTQAFYSMDHKDLWQVLRSPLSQDMSDLSPVQHQGVLSKLMEAEDAASGIV
                     EVPRALFKEVSLYDLWKGPGFNATVLKEKELRRSQALFLYELLEKTTERPEELLSSRQ
                     LVKGVQCSHIDAMSAHVFLALFQHFENNFSLLSPDQVNCLAWKYWEVSRSSMPPFLLA
                     TLPSRFLASVPPSRCVRFLISLGKRHLDTLVLDSDKRSLVIRKVQQCLDGVIADEYTV
                     DIVGNLLCHLPASFIERGISPRAWATALHGLRSCRALSSGQKAAVRFRLLEQWGPPQN
                     WTAETTKDLAPFLAFFSGDELHTVATKFPEILQQTASKMVGTLLPKEFLWAVFESVRN
                     SSNESPGSDPTFGCHGVVTPSSDDIVKLAEANACWDPEVLLCMEEDTFIRNVELLGAV
                     KGFSRPQLMALKEKAIQVWDLPSHWKEHHVVSLGRIALALNESELEQLDLSSIDTVAS
                     LGQQTEWTPGQAKSILQEFLEDSGCGIQDLKSFHLVGLGPTLCAMDPTEIPLIKTSEF
                     RAVVARIGTLLCSTPVLAGFKKKAEVVFGRPTEWTSSILQELGTIAAGLTKAELRMLD
                     KELMPYFQPWAIRCLPGEVFKELSTEQIASLGPQNAAFVTHSQRLQLSSSQLQSLQRA
                     VDGAKTHFWQIDPMSSSPTWPASTGSPTGEPTFQALWLGCPLLLLMAKS"
ORIGIN      
        1 atgtctcagg aacctaggat gtactccctt ctcctggtcc tcttcctgag ccatggaggt
       61 gcatgtcaga gagagccaag ctccaggcag gatttacatc cattgttgca gaaaatggcg
      121 gaagaaataa tagagggaag ctatctgaat gcgttactgg atctcgcact gtttgaaagc
      181 tcccatgtct ggactgccga cctgtcccac agagtccttg cctatctgaa ctcacggaac
      241 gtggccttca ccattcccag cctgcaggca gtcatggaaa cccatctgga acagtatctg
      301 taccaaccgc agaagctgct ggaggacctg agggccactg atgctcagca gttccacacc
      361 gccatgaaat gccttctgga agacaagtgg ggccacctgg acttggagga catcgtcatc
      421 aacttgggag acattcggga cgaggccctt cagagccctg gtgtgaaccg cagcctgttt
      481 ctcatcacac tggaacggtg tttccaggtg ctgaatgcct tggagtgtgt agaggtcctg
      541 ggcaaggtgc tcagagggtc ctccggcagc ttcctgcagc cagacatcac agacaggcta
      601 ccccaggacc tgcacgaaga tgcctttaag aacctgtctg cagtgttcaa agatctctat
      661 gaccagactt cagctcacac ccagagagct ctctactcat ggatgacggg gatcctgagg
      721 acacctttca acgtcactga tggctcaatt tcatgggtca gtgcagaaaa attatggatt
      781 ttgggcagat acatggttca cctatcattt gaagaaatta tgaacattag tcctatagaa
      841 atcgggctgt ttatcagcta tgacaacgcg accaagcagc tggatatggt gtatgatgtc
      901 actccagaac tggcccaggc atttctggag aggatccgcg gttccagctt tgacatgagg
      961 aacatctcta ccatccacag gttggggctg ttggtttgtt tctatgatgg tctggagctg
     1021 ctggatgccg ccctagccca agtccttctc caccagatgc tcaagtgtag ccgcctccgg
     1081 ggcttccagg ctggcgtcca gaagctcaag gccaacctcc tggacattgc tacagagaac
     1141 cagaccctca acgagaccct aggctctctg tcagatgcgg ttgtaggtct gaccagcact
     1201 cagctggaat ccctctcctc cgacgcagtg cacagcgcca tctctaccct caaccaggtt
     1261 acaggctggg gcagaagcca gatcgtcatc ttatctgcca aatacttggc tcaggaaaag
     1321 gtgctgtcct tctacagtgt cagccagatg ggcgtgctgc tggcaggggt gggcacacaa
     1381 gccttctaca gcatggacca caaagatctc tggcaggtgc tgagaagccc tctttcccag
     1441 gatatgtctg acttgtcacc tgtccagcat caaggtgtcc tcagcaagct gatggaagca
     1501 gaagatgctg cttcgggcat cgtggaggta ccgagagctc tttttaagga ggtgtctctc
     1561 tatgatttat ggaaaggacc tggattcaat gctacagtcc tgaaggaaaa ggagcttcga
     1621 aggagccagg ccctgttcct gtatgagctt ctggaaaaga ccactgaaag gcccgaggaa
     1681 ctcctgagct cccggcagct ggtgaagggc gtacagtgct cacacatcga tgccatgagt
     1741 gcccacgtct ttctggccct cttccagcat tttgagaata acttctccct gctttctcca
     1801 gatcaggtca attgcttggc atggaaatac tgggaggttt caaggtcctc catgccgcca
     1861 ttcctcttgg ccactctccc gtcccgattc ctggcttcag ttcccccctc tcgctgtgtg
     1921 cgttttctga tcagcctggg taagaggcac ttggatacct tggttttaga ttctgacaaa
     1981 aggagtttgg tcatcaggaa agtgcaacag tgtttggatg gtgtcattgc tgatgaatac
     2041 actgtggaca ttgtgggaaa cctcctgtgc cacttgccag cttccttcat tgagagaggg
     2101 atctcaccca gagcctgggc cactgctctg catggtctca gaagctgtag agctctcagt
     2161 tccgggcaga aggccgcagt gaggttcagg ctcttggagc agtggggacc tcctcagaac
     2221 tggacagcag agacaaccaa ggacttggca cctttcttag cttttttctc aggagatgaa
     2281 ctgcacaccg ttgccacaaa gtttcctgaa atccttcaac aaacagcttc caagatggtt
     2341 ggtacgttgc ttcctaagga atttctctgg gctgtctttg agtctgttcg gaatagcagt
     2401 aatgagagcc ccggctctga ccccaccttc ggttgtcatg gagttgtgac tccatcttca
     2461 gatgatatcg tcaagttagc tgaagccaat gcctgctggg accccgaggt ccttctctgc
     2521 atggaggagg acactttcat caggaatgtg gagctgctgg gggctgtgaa ggggttcagc
     2581 cgacctcaac tgatggccct gaaggagaag gcaatccagg tttgggactt gccctcccac
     2641 tggaaagaac accatgttgt ctccctgggg cgcattgctt tggctcttaa tgagagtgag
     2701 ttggagcagt tggacctcag ctccatagac accgtggcat ccctgggcca gcagacagaa
     2761 tggaccccag gacaggctaa atccattctg caggaattcc ttgaagattc aggctgtggt
     2821 atccaagatc tgaagagctt ccatttggtt gggcttggcc ctactctatg tgccatggac
     2881 cccactgaaa taccacttat taagacctca gaattcaggg cagtggtagc tagaattggt
     2941 acactgctct gcagcacccc tgtcttggct ggatttaaga agaaagcaga agttgtattt
     3001 gggagaccca ccgagtggac cagctccatc ttgcaggagc ttgggaccat tgcagctggg
     3061 ctaacgaagg cagagctccg aatgcttgac aaagaactga tgccgtattt ccagccatgg
     3121 gccataagat gcctgcctgg tgaggtattc aaagagctgt ccactgagca gatcgcttcc
     3181 ctgggtcctc agaatgcagc ctttgtaacc cactcccagc gcctgcagct cagctcctca
     3241 cagctgcaga gcctccagag ggcagtagat ggcgccaaga ctcacttctg gcagatcgat
     3301 ccaatgagtt ccagccctac ctggccagcc tccactgggt ccccaacagg agagcccacc
     3361 ttccaggctc tttggcttgg ctgtcccctg ctgcttctga tggccaaatc ctgatgccca
     3421 gtggcctgtt taatgttgtg agaagctgtt gaaagtgtgg agagacagaa gctgctttca
     3481 gaccggggga gacctttacc tgaggagcct cagggagggc aggaagatca cagggtcttg
     3541 gaaagataat tattaaaaac catcttgcat tcttaa
//
