LOCUS       NM_148892               1258 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus osteoclast stimulating factor 1 (Ostf1), mRNA.
ACCESSION   NM_148892 XM_008760287
VERSION     NM_148892.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1258)
  AUTHORS   Barallobre-Barreiro,J., Oklu,R., Lynch,M., Fava,M., Baig,F.,
            Yin,X., Barwari,T., Potier,D.N., Albadawi,H., Jahangiri,M.,
            Porter,K.E., Watkins,M.T., Misra,S., Stoughton,J. and Mayr,M.
  TITLE     Extracellular matrix remodelling in response to venous
            hypertension: proteomics of human varicose veins
  JOURNAL   Cardiovasc Res 110 (3), 419-430 (2016)
   PUBMED   27068509
REFERENCE   2  (bases 1 to 1258)
  AUTHORS   Moser,K. and White,F.M.
  TITLE     Phosphoproteomic analysis of rat liver by high capacity IMAC and
            LC-MS/MS
  JOURNAL   J Proteome Res 5 (1), 98-104 (2006)
   PUBMED   16396499
REFERENCE   3  (bases 1 to 1258)
  AUTHORS   Szymkiewicz,I., Destaing,O., Jurdic,P. and Dikic,I.
  TITLE     SH3P2 in complex with Cbl and Src
  JOURNAL   FEBS Lett 565 (1-3), 33-38 (2004)
   PUBMED   15135048
REFERENCE   4  (bases 1 to 1258)
  AUTHORS   Sparks,A.B., Hoffman,N.G., McConnell,S.J., Fowlkes,D.M. and
            Kay,B.K.
  TITLE     Cloning of ligand targets: systematic isolation of SH3
            domain-containing proteins
  JOURNAL   Nat Biotechnol 14 (6), 741-744 (1996)
   PUBMED   9630982
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On or before Mar 18, 2021 this sequence version replaced
            XM_008760287.3, NM_148892.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC062400.1, AF523266.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676786 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-200               JAXUCZ010000001.1  225475652-225475851 c
            201-247             JAXUCZ010000001.1  225450185-225450231 c
            248-298             JAXUCZ010000001.1  225442705-225442755 c
            299-362             JAXUCZ010000001.1  225439993-225440056 c
            363-416             JAXUCZ010000001.1  225438773-225438826 c
            417-524             JAXUCZ010000001.1  225436667-225436774 c
            525-574             JAXUCZ010000001.1  225435977-225436026 c
            575-653             JAXUCZ010000001.1  225433165-225433243 c
            654-752             JAXUCZ010000001.1  225431570-225431668 c
            753-1258            JAXUCZ010000001.1  225428661-225429166 c
FEATURES             Location/Qualifiers
     source          1..1258
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q51"
     gene            1..1258
                     /gene="Ostf1"
                     /gene_synonym="Sh3d3"
                     /note="osteoclast stimulating factor 1"
                     /db_xref="GeneID:259275"
                     /db_xref="RGD:628849"
     exon            1..200
                     /gene="Ostf1"
                     /gene_synonym="Sh3d3"
                     /inference="alignment:Splign:2.1.0"
     CDS             167..811
                     /gene="Ostf1"
                     /gene_synonym="Sh3d3"
                     /codon_start=1
                     /product="osteoclast-stimulating factor 1"
                     /protein_id="NP_683690.2"
                     /db_xref="GeneID:259275"
                     /db_xref="RGD:628849"
                     /translation="MSKPPPKPVKPGQVKVFRALYTFEPRTPDELYFEEGDIIYITDM
                     SDTSWWKGTCKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL
                     DKAGSTALYWACHGGHKDIVEVLFTQPNVELNQQNKLGDTALHAAAWKGYADIVQLLL
                     AKGARTDLRNNEKKLALDMATNAACASLLKKKQATDGARTLSNAEDYLDDEDSD"
     exon            201..247
                     /gene="Ostf1"
                     /gene_synonym="Sh3d3"
                     /inference="alignment:Splign:2.1.0"
     exon            248..298
                     /gene="Ostf1"
                     /gene_synonym="Sh3d3"
                     /inference="alignment:Splign:2.1.0"
     exon            299..362
                     /gene="Ostf1"
                     /gene_synonym="Sh3d3"
                     /inference="alignment:Splign:2.1.0"
     exon            363..416
                     /gene="Ostf1"
                     /gene_synonym="Sh3d3"
                     /inference="alignment:Splign:2.1.0"
     exon            417..524
                     /gene="Ostf1"
                     /gene_synonym="Sh3d3"
                     /inference="alignment:Splign:2.1.0"
     exon            525..574
                     /gene="Ostf1"
                     /gene_synonym="Sh3d3"
                     /inference="alignment:Splign:2.1.0"
     exon            575..653
                     /gene="Ostf1"
                     /gene_synonym="Sh3d3"
                     /inference="alignment:Splign:2.1.0"
     exon            654..752
                     /gene="Ostf1"
                     /gene_synonym="Sh3d3"
                     /inference="alignment:Splign:2.1.0"
     exon            753..1258
                     /gene="Ostf1"
                     /gene_synonym="Sh3d3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acttcctggt gggaaggctg ggctgtctgc ggagctcgct agtcccggtg tcccgcttcg
       61 ggttgcgcgc gggtccggag cgggcgcggc tagcgcaggc ttggctccca gttcctgtct
      121 gcgtgtgggg ctcccgcggc tgagcctggc cgctccgagt agcgccatgt ccaagccacc
      181 tcccaaaccg gtcaaaccag ggcaagttaa agtcttcaga gctctatata cgtttgaacc
      241 gagaactcca gatgaattat acttcgaaga aggagatatt atctacatca ctgacatgag
      301 cgacaccagc tggtggaaag gaacatgcaa aggcagaaca ggactgatcc caagcaacta
      361 tgtggctgag caggcagaat ccattgacaa tccattgcat gaggctgcaa aaagaggcaa
      421 cttgagctgg ctgagggagt gcttggacaa ccgagtgggc gtgaacggcc tggacaaggc
      481 tggaagcaca gccctgtact gggcctgcca cggtggccac aaagacatag tggaggttct
      541 gtttactcag ccgaatgtgg aactgaacca gcagaacaag ctgggagaca cggctctgca
      601 cgcagctgcc tggaagggtt atgcagacat tgtccagttg ctactagcaa aaggcgcgag
      661 gacagacttg agaaacaatg agaagaagct agccttggac atggccacca acgctgcctg
      721 tgcatcgctc ctgaagaaga agcaggcaac agatggggct cgaacgttaa gcaatgctga
      781 ggactacctc gatgatgaag actcagactg atgcctcccg gagctgcttt gatgcctaaa
      841 cttcttttgc ttttgccatt ccaaaacctg ggttgttttg ccagaagagt attgataatt
      901 gttcctttta ccgtctgtat gagcacggca tggctacact gtgacctatg atgagtgtgc
      961 gtgagcgtgg gtaattctca cctgcggctt gccaataaga gaagagatac tttgttgtat
     1021 aaaatacata tatgttcacc agggtaaaat aaaaaacaag attatttcta tttatcatgc
     1081 aaaaggaatt ttaataattg tttctttaaa aatcattttt ttaagttctt tacctcaaag
     1141 aatgagatgt tttgagtggg attttcaaag gagaaatgct tgttataaca gtagaccaaa
     1201 actctcaaca gaaaattgtc agctcttctg acaaaaataa acatttgaag agaccttc
//
