LOCUS       NM_001394068            2821 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus O-sialoglycoprotein endopeptidase-like 1
            (Osgepl1), transcript variant 1, mRNA; nuclear gene for
            mitochondrial product.
ACCESSION   NM_001394068 XM_039083458
VERSION     NM_001394068.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2821)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On Mar 30, 2021 this sequence version replaced XM_039083458.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.33629.1,
                                           SRR26643297.31500.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-79                JAXUCZ010000009.1  55721226-55721304   c
            80-322              JAXUCZ010000009.1  55719984-55720226   c
            323-710             JAXUCZ010000009.1  55715231-55715618   c
            711-1064            JAXUCZ010000009.1  55713379-55713732   c
            1065-1195           JAXUCZ010000009.1  55712481-55712611   c
            1196-1267           JAXUCZ010000009.1  55712292-55712363   c
            1268-1371           JAXUCZ010000009.1  55710445-55710548   c
            1372-2821           JAXUCZ010000009.1  55707389-55708838   c
FEATURES             Location/Qualifiers
     source          1..2821
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q22"
     gene            1..2821
                     /gene="Osgepl1"
                     /note="O-sialoglycoprotein endopeptidase-like 1"
                     /db_xref="GeneID:314548"
                     /db_xref="RGD:1305575"
     exon            1..79
                     /gene="Osgepl1"
                     /inference="alignment:Splign:2.1.0"
     exon            80..322
                     /gene="Osgepl1"
                     /inference="alignment:Splign:2.1.0"
     CDS             102..1346
                     /gene="Osgepl1"
                     /EC_number="2.3.1.234"
                     /note="isoform 1 is encoded by transcript variant 1;
                     probable O-sialoglycoprotein endopeptidase 2; probable
                     tRNA threonylcarbamoyladenosine biosynthesis protein
                     Osgepl1; t(6)A synthase; N6-L-threonylcarbamoyladenine
                     synthase; O-sialoglycoprotein endopeptidase-like protein
                     1; t(6)A37 threonylcarbamoyladenosine biosynthesis protein
                     Osgepl1; probable tRNA N6-adenosine
                     threonylcarbamoyltransferase, mitochondrial"
                     /codon_start=1
                     /product="tRNA N6-adenosine threonylcarbamoyltransferase,
                     mitochondrial isoform 1"
                     /protein_id="NP_001380997.1"
                     /db_xref="GeneID:314548"
                     /db_xref="RGD:1305575"
                     /translation="MLMLSKTAGAIPRPPRSNVRGFIRRFNVQPRALFHHKLVLGIET
                     SCDDTAAAVVDETGNVLGEALHSQTEVHLKTGGIVPPVAQQLHRENIQRIVEEALSAS
                     GVSPSDLSAIATTIKPGLALSLGVGLSFSVQLVNQFKKPFIPIHHMEAHALTIRLTHK
                     VGFPFLVLLISGGHCLLALVQSVSDFLLLGKSLDIAPGDMLDKVARRLSLIKHPECST
                     MSGGKAIEHLAKEGNRFHFTINPPMQNAKNCDFSFTGLQHVTDKLITHKEKEEGIEKG
                     QILSSAADIAAAVQHATACHLAKRTHRAILFCQQKNLLSPANAVLVVSGGVASNLYIR
                     RALEIVANATQCTLLCPPPRLCTDNGIMIAWNGIERLRAGLGILHDVEDIRYEPKCPL
                     GIDISREVAEAAIKVPRLKMTL"
     exon            323..710
                     /gene="Osgepl1"
                     /inference="alignment:Splign:2.1.0"
     exon            711..1064
                     /gene="Osgepl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1065..1195
                     /gene="Osgepl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1196..1267
                     /gene="Osgepl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1268..1371
                     /gene="Osgepl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1372..2821
                     /gene="Osgepl1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aatagaaatt cctccgtttc ccagccagcg gattccagct gtgttgtccg aattgaggaa
       61 acctgattct tccctacagg aattatttgt agagtgtaaa tatgctaatg ttaagtaaga
      121 cagcaggagc tattccgaga ccaccaagga gtaacgttcg tggatttata agaagattta
      181 atgttcaacc tagagcactt tttcatcata aactggtgct gggaattgaa accagctgtg
      241 atgacacagc agctgctgtg gtggatgaaa ctggaaatgt gctgggagaa gcactgcact
      301 cccagacgga agtccatctg aaaacaggtg ggattgttcc tccagtcgct caacagcttc
      361 acagagaaaa tattcagcga atagtagaag aagctctttc tgccagtggg gtctccccaa
      421 gcgacctctc agcaattgca actaccatca aaccaggact ggccctaagc ctgggggttg
      481 gcttatcctt tagcgtacag ctagtaaatc agtttaaaaa gccatttatc ccaatccatc
      541 acatggaggc tcacgcgctg actattaggc tgacccacaa agtcggattt ccttttttag
      601 ttcttttgat ttctggaggc cactgcctgt tggcgttagt tcagagtgtt tcagattttc
      661 tgctcctcgg gaagtccctg gacatagcgc caggcgacat gcttgacaag gtggcaagaa
      721 gactttcttt aatcaaacat ccagaatgtt ctacaatgag tggtgggaaa gctatagaac
      781 atttggccaa agaaggaaat agattccact ttactatcaa tccacccatg cagaatgcta
      841 agaactgtga tttttctttt acgggacttc aacatgtcac cgataagcta ataacacaca
      901 aggaaaaaga agaaggcatt gagaaggggc aaatcctgtc atcagccgca gacattgctg
      961 ctgcggtaca gcacgcaaca gcgtgccacc ttgcgaaaag aacacatcgt gctattctgt
     1021 tttgccagca gaaaaatttg ctatctccag ctaacgcagt attagttgtg tctggaggtg
     1081 ttgcaagtaa cttgtacatc cgaagagcat tggaaattgt agcaaatgca acacaatgca
     1141 ctttgttgtg tccccctccg agactgtgca ctgacaatgg tatcatgatt gcatggaatg
     1201 gaattgaaag attacgtgct ggcttgggca ttttacatga tgtagaagac atccgatacg
     1261 aaccaaaatg tcctctcgga atagacatat ccagagaagt tgcagaagct gccataaaag
     1321 taccacgatt aaaaatgaca ctttgatttg tgactgtaaa ggtctctaca gattgctgtt
     1381 ggaagacatg gtgagagtga agaaataaca agtaaaagca acaactagtt cctgaactca
     1441 cgtcttacat ttggatttgc attttgtatg taattatgaa ttaactactt gtagtttcct
     1501 aaggatacta ctatcagtac acataaatta tggaagaaaa tttaccaaaa tatttattat
     1561 gaatacattc atttgggaca gcctcactct agctcaggta tgtgtagaac tcactgtaca
     1621 gcttacactg gtttgaatct cagcaaacct ctcgcatgaa tcgcccagat ctttggttaa
     1681 atatggttcc acccggtaaa gctcaggatg ttatcttgac gcttttctta tctataatct
     1741 tgaaacaacc aaatgataaa aaatagtcta tgaattgagg acatcctccg cttaaggttc
     1801 agggagctct ccagaggcaa ggtagaacat ttgttagagc cagcaggtat gaaaatggtg
     1861 gcccccagac acaactggac tgacgcacat atgacctcag ggatgtggca gcacacacag
     1921 ggcccgcaca gtctcaagcc agatcgggcc gtagtcctca gatatgagag tggacataga
     1981 ctcccatctc taactaagaa gctggcgtaa ctgacatctt cttgcaatga acaatttttc
     2041 tccaatggag tctcactggg tatataaacc ccacataagg ctaggtgggc ctcatgcctt
     2101 agtttggaca ttttttgttt tgttttgttt tactggtctt ttgcttgtat actgtggttt
     2161 ccacttttgt gcttttatgg tgtgtatgtt ttgtgttctt ttaaattcta gtttgtttag
     2221 ggattttgtt ttccagatgc aaagaaaagg taccccttgt agataatggg atcactctag
     2281 tttccgtgta tttgaattat tctccccgtg taccttatgg gcagtgattc ccgatactcc
     2341 tgtgaatatt tagacactgt acacttcggg tctctcagaa gtctcacaca ttgataagta
     2401 tttgacagct gaagtgttgt aagtgttaat atgtgggctc ttaactcagc atatcaactc
     2461 aaaaatgttt ctaactcttg agacgtattt tagatatata gatacacaca cacacacaca
     2521 cacacacaca cacacacata tatatatata taatatgtat tattctactc atgacagttg
     2581 ataaatatta taggtataag tacaggcatt ctacatagaa attctaattt ttttcaggca
     2641 atacctgacg tgcggttaaa ttccatatga aactctggga agaaaatcta ttcagtatta
     2701 atataaataa cttccattca aacaacaaca caaatttcat cccctgaaga tgctgtgtat
     2761 ttttaccgca ataaatatct gctttgagaa agaccagtaa agaatcattt catgtttcaa
     2821 a
//
