LOCUS       XM_039092034            2934 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus oxysterol binding protein 2 (Osbp2),
            transcript variant X35, mRNA.
ACCESSION   XM_039092034
VERSION     XM_039092034.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092034.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2934
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2934
                     /gene="Osbp2"
                     /gene_synonym="RGD1309479"
                     /note="oxysterol binding protein 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 14
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 12 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:305475"
                     /db_xref="RGD:1310505"
     CDS             190..1566
                     /gene="Osbp2"
                     /gene_synonym="RGD1309479"
                     /codon_start=1
                     /product="oxysterol-binding protein 2 isoform X24"
                     /protein_id="XP_038947962.1"
                     /db_xref="GeneID:305475"
                     /db_xref="RGD:1310505"
                     /translation="MEDSTSFITVITEAKEDRKPEGGPGTTSVDWTSADNVREVLDGA
                     SFMPKDSCKVKRRVRIPDKPNYSLNLWSIMKNCIGRELSRIPMPVNFNEPLSMLQRLT
                     EDLEYHHLLDKAVNCTSSVEQMCLVAAFSVSSYSTTVHRIAKPFNPMLGETFELDRLE
                     DMGLRSLCEQVSHHPPSAAHHVFSKHGWSLWQEITIASKFRGKYISIMPLGAIHLEFQ
                     ASGNHYVWRKSTSTVHNIIVGKLWIDQSGDIEIVNHKTKDRCQLKFVPYSYFSKEAAR
                     KVTGVVSDSQGKAHYVLSGSWDEQMECSKIVHSSPSSDGKQKTVYQTLPAKLLWRKYP
                     LPENAENMYYFSELALTLNEQEEGVAPTDSRLRPDQRLMERGRWDEANTEKQRLEEKQ
                     RLNRRRRLESCTAGCGGEEEKESDGYSPLWFEKRLDPLTGEMACIYKGGYWEAKEKKD
                     WHMCPNIF"
ORIGIN      
        1 gtcctaaaac catgcgggct tgtgccgagg agtacagact ccctctgtgg tgcggcacgt
       61 cccttgcctg tcactaactg ccaacatccc cacccaccat gtcgaagttc taagtcccaa
      121 tgaagaagct tcttgacttc caaaggggag aacagtgaag aagatgaaga tactgagtac
      181 tttgatgcca tggaagactc cacatctttc atcaccgtaa tcaccgaggc caaggaagac
      241 agaaagcctg agggtggacc tgggacgacc tctgtggact ggacctcagc agataatgta
      301 cgtgaggtat tagatggtgc ctcattcatg cccaaggatt catgcaaagt gaagaggcga
      361 gtccggatcc ctgacaaacc caactatagc cttaacctct ggagcatcat gaagaattgc
      421 attggccgag agctctcccg gatccccatg ccggtgaact tcaatgagcc cctgtccatg
      481 ctccagcgac ttacagagga cctcgagtac caccacctgc tggacaaggc ggtgaactgc
      541 accagctctg tggagcagat gtgcctggtg gctgccttct cggtgtcctc ctactccacc
      601 accgtgcacc gcatcgccaa gcccttcaac ccgatgctgg gggagacctt cgagttggat
      661 cgcctggagg acatgggcct gcgttctctc tgcgagcagg tgagccatca ccccccgtct
      721 gctgcccacc acgtgttctc taagcatggc tggagcctct ggcaggagat caccatcgcc
      781 agcaagttcc gggggaaata catctccatc atgccacttg gtgccatcca cctcgaattc
      841 caggccagtg gcaatcacta cgtgtggagg aagagtacct ccactgtgca caacatcatc
      901 gtgggcaagc tctggattga ccagtcaggg gacattgaga ttgtgaacca caagaccaag
      961 gaccggtgcc agctgaagtt cgtgccctac agctacttct ccaaagaggc agcccgaaag
     1021 gtgactggag tggtgagcga cagccagggc aaggcccact acgtgctgtc aggttcctgg
     1081 gatgagcaga tggagtgttc taagattgtg cacagcagcc ccagctctga tgggaagcag
     1141 aaaaccgtgt accagacgct gccagccaag ctgctatgga ggaaataccc actgccggag
     1201 aacgcggaga acatgtacta tttctcggag ctggccctga ccctcaacga gcaggaggag
     1261 ggcgtggcgc ccaccgacag ccgcctgcgg ccggaccagc ggctgatgga gaggggccgc
     1321 tgggacgagg ccaacaccga gaagcagcgc ctggaggaga agcagcgcct gaaccggcga
     1381 cggcggctgg agtcgtgcac ggccggctgt ggcggggagg aagagaagga gtcagatggc
     1441 tattcgccgc tgtggttcga gaagaggctg gacccgctga ccggggagat ggcctgcata
     1501 tacaagggcg gctactggga ggccaaggag aagaaggact ggcacatgtg ccccaacatc
     1561 ttctgagcca ctcctgcgga aaatacaggc acctgcactg cctgtcagac ttttctttaa
     1621 tgcacccgat ttaatacaga acccaccaat gcgtgtgtgc gcacgcgcgt gaccacaccg
     1681 cttaagaagg ggtaagggct gacctgggtt cttgccagcc ccaggtcgcc gggtcacgtg
     1741 tgcccgttgt tatcattgac ttgggcccca tgggcaccct agttcccagt taccacaact
     1801 caggccggct ggccgggcca tgggctgccc aggtcactaa ccccaaccca gggaggaaat
     1861 atttccctcc tagggagcct cttttgactt ttttaagaaa aaaaaatatc catttctttc
     1921 caacgatgag gtttagtaaa tatttttagc acatcactta gaagactcac tttccaagtg
     1981 ttcgttcttg ccacagaacg gttctggcaa gaagcccgtt tttaaagacc tgaggaagcc
     2041 aggccccttt gaatggggaa cacttcaaac acagcccggc tttctagctg gactgtccaa
     2101 gctccaggag cgcaacaccc gcagagacag caggaagcct ggctggccgg cccagcatgg
     2161 catgcagagc ccgaaggggg aaggcagtca aaggcagccg cccccccccc cccgtgccag
     2221 gccttggcca tggtggggca gtatcccagt cccaaagagg ccaggaaggg ctgaaaggca
     2281 gggcccttag gtgcttcctg cccaagaatc aggcccccaa atcagcaata aggaacaaac
     2341 ccttccttta gcctgggctg gtgacccagg ctcccaacac ctggcctccc gccttgtcct
     2401 tcggcggcat cagggtgcct cactccgaag tcctgacatc tttatttgcc taatttatat
     2461 atatatatga tatacaaata tatatgacat agctattttg cttaaatttc tatgatacgt
     2521 gaaagtgaaa aatgatgaag acagactgcc tgtctgagtt tggcctcctg ccagccccgc
     2581 cctctccttg tagccctccc agtggcttct gccaacctta gaaatgaaac ctgcccctca
     2641 gaccctctgc ctccaaccca tctcacttca gtttgatctg gaaagttcat tgcagggcct
     2701 ttctttctac tccaggcctg gttttgtttt ttgttttgtt ttttattaaa aaagaaaaag
     2761 aaaacaccac gtatgaaatg ccttacaatg cccactctag agagggggtg ggaagggcgg
     2821 gggagggaag gtcactcggt ctccctcaga gctggaatgt accccttccc agcaggctga
     2881 gcaagcaagc accttctgat cataataaaa accttggttc tggagttttc caca
//
