LOCUS       XM_039092014            4103 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus oxysterol binding protein 2 (Osbp2),
            transcript variant X8, mRNA.
ACCESSION   XM_039092014
VERSION     XM_039092014.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092014.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4103
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4103
                     /gene="Osbp2"
                     /gene_synonym="RGD1309479"
                     /note="oxysterol binding protein 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 17
                     ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 31 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:305475"
                     /db_xref="RGD:1310505"
     CDS             36..2735
                     /gene="Osbp2"
                     /gene_synonym="RGD1309479"
                     /codon_start=1
                     /product="oxysterol-binding protein 2 isoform X8"
                     /protein_id="XP_038947942.1"
                     /db_xref="GeneID:305475"
                     /db_xref="RGD:1310505"
                     /translation="MGKAAALSRGGGCAGRSRGLSSLFTVVPCLSCHTAAPGMNSSTL
                     GSGPAPKPQFQPVQAPERELLSEQVCQPISEPRSEPGSQTTFVPQPLGAGQESESLGL
                     WPGSGPNTKASPELPSPPRSTAESLPKPESKAGPKTQSVLRPGQSKTSAGSPVSGTSV
                     PMVSPPLDSYKGWLFKWTNYLKGYQRRWFVLGNGLLSYYRNQGEMAHTCRGTINLASA
                     HFETEDSCGILLCNGARTYHLKASSEVDRQQWITVLELAKAKAIRVMNTQSDDSGDDD
                     EEPAAPADNSDLHHTLKTLSLKLDDLGTCNDLIAKHGAALQRSLNELDSLKIPSESGE
                     KLKVVNERATLFRITSNAMINACKDFLELAEIHSRKWQRALNYEQEQRVHLEETIEQL
                     AKQHNSLERAFCNTPGGPASSSKSFSEGSFLTSKGENSEEDEDTEYFDAMEDSTSFIT
                     VITEAKEDRKPEGGPGTTSVDWTSADNVREVLDGASFMPKDSCKVKRRVRIPDKPNYS
                     LNLWSIMKNCIGRELSRIPMPVNFNEPLSMLQRLTEDLEYHHLLDKAVNCTSSVEQMC
                     LVAAFSVSSYSTTVHRIAKPFNPMLGETFELDRLEDMGLRSLCEQVSHHPPSAAHHVF
                     SKHGWSLWQEITIASKFRGKYISIMPLGAIHLEFQASGNHYVWRKSTSTVHNIIVGKL
                     WIDQSGDIEIVNHKTKDRCQLKFVPYSYFSKEAARKVTGVVSDSQGKAHYVLSGSWDE
                     QMECSKIVHSSPSSDGKQKTVYQTLPAKLLWRKYPLPENAENMYYFSELALTLNEQEE
                     GVAPTDSRLRPDQRLMERGRWDEANTEKQRLEEKQRLNRRRRLESCTAGCGGEEEKES
                     DGYSPLWFEKRLDPLTGEMACIYKGGYWEAKEKKDWHMCPNIF"
ORIGIN      
        1 actcggcgct cggccgcgct cgggtccaca gctctatggg gaaagcggcc gctctaagcc
       61 gaggcggcgg ctgcgctggc cgctcccgcg ggctctcgtc gctgttcacg gttgtgccct
      121 gtctgtcctg ccacacggcg gcgccgggca tgaactcgtc cacgttgggc tcagggccgg
      181 cgccaaagcc tcaattccag cctgtacagg caccagagcg ggagttgctg tcggaacagg
      241 tgtgtcagcc aatttctgag ccgagatccg aacctgggtc ccagacgacg tttgtgccac
      301 agcccttagg ggctgggcag gaatcggaat cactgggatt gtggccgggg tctgggccca
      361 ataccaaagc ttcaccagag ctgccatccc cgccgcgatc aacagcagag agtttgccca
      421 aacccgagtc taaggcgggg ccgaagaccc agtctgttct gcgaccagga cagtcaaaga
      481 cttctgccgg gagtccagtg tcagggacta gtgtcccaat ggtctcacca cctctggaca
      541 gctacaaggg ctggctcttc aagtggacta actacctgaa gggctaccag cgccgctggt
      601 tcgtgcttgg caatggcctg ctatcctact acagaaacca gggtgaaatg gcccacacct
      661 gccgtggaac catcaacctg gcctccgcgc acttcgaaac agaggactct tgtggaatct
      721 tgctatgcaa cggggcaagg acctaccacc tcaaggccag ctcagaggtg gaccgtcagc
      781 aatggatcac cgttctggag ttggccaagg ccaaggctat ccgtgtgatg aacactcagt
      841 cagatgactc tggggacgac gacgaagagc ctgctgcccc tgctgacaac agtgatctcc
      901 accacactct taagaccctc tcactgaagc tagacgacct cggcacgtgc aatgacctca
      961 ttgccaagca tggcgctgcc ctccagcgct ccctgaatga gctggacagt cttaagatcc
     1021 catcagagag tggggagaag ctgaaggttg tgaacgagcg ggccaccctc ttccgcatca
     1081 catcaaatgc tatgatcaac gcctgtaagg acttcctgga actagcggag attcacagcc
     1141 ggaaatggca gcgggctctg aattatgagc aggagcaacg agtccacctg gaggaaacca
     1201 ttgagcagtt ggccaagcag cacaacagtc ttgaacgggc cttctgcaac acccctggcg
     1261 ggccagccag ctccagcaag agcttcagcg agggaagctt cttgacttcc aaaggggaga
     1321 acagtgaaga agatgaagat actgagtact ttgatgccat ggaagactcc acatctttca
     1381 tcaccgtaat caccgaggcc aaggaagaca gaaagcctga gggtggacct gggacgacct
     1441 ctgtggactg gacctcagca gataatgtac gtgaggtatt agatggtgcc tcattcatgc
     1501 ccaaggattc atgcaaagtg aagaggcgag tccggatccc tgacaaaccc aactatagcc
     1561 ttaacctctg gagcatcatg aagaattgca ttggccgaga gctctcccgg atccccatgc
     1621 cggtgaactt caatgagccc ctgtccatgc tccagcgact tacagaggac ctcgagtacc
     1681 accacctgct ggacaaggcg gtgaactgca ccagctctgt ggagcagatg tgcctggtgg
     1741 ctgccttctc ggtgtcctcc tactccacca ccgtgcaccg catcgccaag cccttcaacc
     1801 cgatgctggg ggagaccttc gagttggatc gcctggagga catgggcctg cgttctctct
     1861 gcgagcaggt gagccatcac cccccgtctg ctgcccacca cgtgttctct aagcatggct
     1921 ggagcctctg gcaggagatc accatcgcca gcaagttccg ggggaaatac atctccatca
     1981 tgccacttgg tgccatccac ctcgaattcc aggccagtgg caatcactac gtgtggagga
     2041 agagtacctc cactgtgcac aacatcatcg tgggcaagct ctggattgac cagtcagggg
     2101 acattgagat tgtgaaccac aagaccaagg accggtgcca gctgaagttc gtgccctaca
     2161 gctacttctc caaagaggca gcccgaaagg tgactggagt ggtgagcgac agccagggca
     2221 aggcccacta cgtgctgtca ggttcctggg atgagcagat ggagtgttct aagattgtgc
     2281 acagcagccc cagctctgat gggaagcaga aaaccgtgta ccagacgctg ccagccaagc
     2341 tgctatggag gaaataccca ctgccggaga acgcggagaa catgtactat ttctcggagc
     2401 tggccctgac cctcaacgag caggaggagg gcgtggcgcc caccgacagc cgcctgcggc
     2461 cggaccagcg gctgatggag aggggccgct gggacgaggc caacaccgag aagcagcgcc
     2521 tggaggagaa gcagcgcctg aaccggcgac ggcggctgga gtcgtgcacg gccggctgtg
     2581 gcggggagga agagaaggag tcagatggct attcgccgct gtggttcgag aagaggctgg
     2641 acccgctgac cggggagatg gcctgcatat acaagggcgg ctactgggag gccaaggaga
     2701 agaaggactg gcacatgtgc cccaacatct tctgagccac tcctgcggaa aatacaggca
     2761 cctgcactgc ctgtcagact tttctttaat gcacccgatt taatacagaa cccaccaatg
     2821 cgtgtgtgcg cacgcgcgtg accacaccgc ttaagaaggg gtaagggctg acctgggttc
     2881 ttgccagccc caggtcgccg ggtcacgtgt gcccgttgtt atcattgact tgggccccat
     2941 gggcacccta gttcccagtt accacaactc aggccggctg gccgggccat gggctgccca
     3001 ggtcactaac cccaacccag ggaggaaata tttccctcct agggagcctc ttttgacttt
     3061 tttaagaaaa aaaaatatcc atttctttcc aacgatgagg tttagtaaat atttttagca
     3121 catcacttag aagactcact ttccaagtgt tcgttcttgc cacagaacgg ttctggcaag
     3181 aagcccgttt ttaaagacct gaggaagcca ggcccctttg aatggggaac acttcaaaca
     3241 cagcccggct ttctagctgg actgtccaag ctccaggagc gcaacacccg cagagacagc
     3301 aggaagcctg gctggccggc ccagcatggc atgcagagcc cgaaggggga aggcagtcaa
     3361 aggcagccgc cccccccccc ccgtgccagg ccttggccat ggtggggcag tatcccagtc
     3421 ccaaagaggc caggaagggc tgaaaggcag ggcccttagg tgcttcctgc ccaagaatca
     3481 ggcccccaaa tcagcaataa ggaacaaacc cttcctttag cctgggctgg tgacccaggc
     3541 tcccaacacc tggcctcccg ccttgtcctt cggcggcatc agggtgcctc actccgaagt
     3601 cctgacatct ttatttgcct aatttatata tatatatgat atacaaatat atatgacata
     3661 gctattttgc ttaaatttct atgatacgtg aaagtgaaaa atgatgaaga cagactgcct
     3721 gtctgagttt ggcctcctgc cagccccgcc ctctccttgt agccctccca gtggcttctg
     3781 ccaaccttag aaatgaaacc tgcccctcag accctctgcc tccaacccat ctcacttcag
     3841 tttgatctgg aaagttcatt gcagggcctt tctttctact ccaggcctgg ttttgttttt
     3901 tgttttgttt tttattaaaa aagaaaaaga aaacaccacg tatgaaatgc cttacaatgc
     3961 ccactctaga gagggggtgg gaagggcggg ggagggaagg tcactcggtc tccctcagag
     4021 ctggaatgta ccccttccca gcaggctgag caagcaagca ccttctgatc ataataaaaa
     4081 ccttggttct ggagttttcc aca
//
