LOCUS       XM_039092009            4296 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus oxysterol binding protein 2 (Osbp2),
            transcript variant X3, mRNA.
ACCESSION   XM_039092009
VERSION     XM_039092009.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092009.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4296
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4296
                     /gene="Osbp2"
                     /gene_synonym="RGD1309479"
                     /note="oxysterol binding protein 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 16
                     ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 5 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:305475"
                     /db_xref="RGD:1310505"
     CDS             37..2928
                     /gene="Osbp2"
                     /gene_synonym="RGD1309479"
                     /codon_start=1
                     /product="oxysterol-binding protein 2 isoform X3"
                     /protein_id="XP_038947937.1"
                     /db_xref="GeneID:305475"
                     /db_xref="RGD:1310505"
                     /translation="MGKAAALSRGGGCAGRSRGLSSLFTVVPCLSCHTAAPGMNSSTL
                     GSGPAPKPQFQPVQAPERELLSEQVCQPISEPRSEPGSQTTFVPQPLGAGQESESLGL
                     WPGSGPNTKASPELPSPPRSTAESLPKPESKAGPKTQSVLRPGQSKTSAGSPVSGTSV
                     PMVSPPLDSYKGWLFKWTNYLKGYQRRWFVLGNGLLSYYRCIQDGITESPLGRNQGEM
                     AHTCRGTINLASAHFETEDSCGILLCNGARTYHLKASSEVDRQQWITVLELAKAKAIR
                     VMNTQSDDSGDDDEEPAAPADNSDLHHTLKTLSLKLDDLGTCNDLIAKHGAALQRSLN
                     ELDSLKIPSESGEKLKVVNERATLFRITSNAMINACKDFLELAEIHSRKWQRALNYEQ
                     EQRVHLEETIEQLAKQHNSLERAFCNTPGGPASSSKSFSEGSFLTSKGENSEEDEDTE
                     YFDAMEDSTSFITVITEAKEDRVNLLSSSPRVLGSIQSTASCPSPEALAAWLSHTAHP
                     QAPRARAHQPQCPCRKPEGGPGTTSVDWTSADNVREVLDGASFMPKDSCKVKRRVRIP
                     DKPNYSLNLWSIMKNCIGRELSRIPMPVNFNEPLSMLQRLTEDLEYHHLLDKAVNCTS
                     SVEQMCLVAAFSVSSYSTTVHRIAKPFNPMLGETFELDRLEDMGLRSLCEQVSHHPPS
                     AAHHVFSKHGWSLWQEITIASKFRGKYISIMPLGAIHLEFQASGNHYVWRKSTSTVHN
                     IIVGKLWIDQSGDIEIVNHKTKDRCQLKFVPYSYFSKEAARKVTGVVSDSQGKAHYVL
                     SGSWDEQMECSKIVHSSPSSDGKQKTVYQTLPAKLLWRKYPLPENAENMYYFSELALT
                     LNEQEEGVAPTDSRLRPDQRLMERGRWDEANTEKQRLEEKQRLNRRRRLESCTAGCGG
                     EEEKESDGYSPLWFEKRLDPLTGEMACIYKGGYWEAKEKKDWHMCPNIF"
ORIGIN      
        1 cactcggcgc tcggccgcgc tcgggtccac agctctatgg ggaaagcggc cgctctaagc
       61 cgaggcggcg gctgcgctgg ccgctcccgc gggctctcgt cgctgttcac ggttgtgccc
      121 tgtctgtcct gccacacggc ggcgccgggc atgaactcgt ccacgttggg ctcagggccg
      181 gcgccaaagc ctcaattcca gcctgtacag gcaccagagc gggagttgct gtcggaacag
      241 gtgtgtcagc caatttctga gccgagatcc gaacctgggt cccagacgac gtttgtgcca
      301 cagcccttag gggctgggca ggaatcggaa tcactgggat tgtggccggg gtctgggccc
      361 aataccaaag cttcaccaga gctgccatcc ccgccgcgat caacagcaga gagtttgccc
      421 aaacccgagt ctaaggcggg gccgaagacc cagtctgttc tgcgaccagg acagtcaaag
      481 acttctgccg ggagtccagt gtcagggact agtgtcccaa tggtctcacc acctctggac
      541 agctacaagg gctggctctt caagtggact aactacctga agggctacca gcgccgctgg
      601 ttcgtgcttg gcaatggcct gctatcctac tacaggtgca ttcaggatgg cattactgag
      661 tcaccacttg gcagaaacca gggtgaaatg gcccacacct gccgtggaac catcaacctg
      721 gcctccgcgc acttcgaaac agaggactct tgtggaatct tgctatgcaa cggggcaagg
      781 acctaccacc tcaaggccag ctcagaggtg gaccgtcagc aatggatcac cgttctggag
      841 ttggccaagg ccaaggctat ccgtgtgatg aacactcagt cagatgactc tggggacgac
      901 gacgaagagc ctgctgcccc tgctgacaac agtgatctcc accacactct taagaccctc
      961 tcactgaagc tagacgacct cggcacgtgc aatgacctca ttgccaagca tggcgctgcc
     1021 ctccagcgct ccctgaatga gctggacagt cttaagatcc catcagagag tggggagaag
     1081 ctgaaggttg tgaacgagcg ggccaccctc ttccgcatca catcaaatgc tatgatcaac
     1141 gcctgtaagg acttcctgga actagcggag attcacagcc ggaaatggca gcgggctctg
     1201 aattatgagc aggagcaacg agtccacctg gaggaaacca ttgagcagtt ggccaagcag
     1261 cacaacagtc ttgaacgggc cttctgcaac acccctggcg ggccagccag ctccagcaag
     1321 agcttcagcg agggaagctt cttgacttcc aaaggggaga acagtgaaga agatgaagat
     1381 actgagtact ttgatgccat ggaagactcc acatctttca tcaccgtaat caccgaggcc
     1441 aaggaagaca gggtgaacct gctctcctca tctccaaggg ttctgggctc catacagtca
     1501 actgcttcct gcccgtctcc tgaggctctg gctgcctggc tgagccacac tgcccatcca
     1561 caggctccta gagcccgggc ccatcagcct cagtgcccct gcagaaagcc tgagggtgga
     1621 cctgggacga cctctgtgga ctggacctca gcagataatg tacgtgaggt attagatggt
     1681 gcctcattca tgcccaagga ttcatgcaaa gtgaagaggc gagtccggat ccctgacaaa
     1741 cccaactata gccttaacct ctggagcatc atgaagaatt gcattggccg agagctctcc
     1801 cggatcccca tgccggtgaa cttcaatgag cccctgtcca tgctccagcg acttacagag
     1861 gacctcgagt accaccacct gctggacaag gcggtgaact gcaccagctc tgtggagcag
     1921 atgtgcctgg tggctgcctt ctcggtgtcc tcctactcca ccaccgtgca ccgcatcgcc
     1981 aagcccttca acccgatgct gggggagacc ttcgagttgg atcgcctgga ggacatgggc
     2041 ctgcgttctc tctgcgagca ggtgagccat caccccccgt ctgctgccca ccacgtgttc
     2101 tctaagcatg gctggagcct ctggcaggag atcaccatcg ccagcaagtt ccgggggaaa
     2161 tacatctcca tcatgccact tggtgccatc cacctcgaat tccaggccag tggcaatcac
     2221 tacgtgtgga ggaagagtac ctccactgtg cacaacatca tcgtgggcaa gctctggatt
     2281 gaccagtcag gggacattga gattgtgaac cacaagacca aggaccggtg ccagctgaag
     2341 ttcgtgccct acagctactt ctccaaagag gcagcccgaa aggtgactgg agtggtgagc
     2401 gacagccagg gcaaggccca ctacgtgctg tcaggttcct gggatgagca gatggagtgt
     2461 tctaagattg tgcacagcag ccccagctct gatgggaagc agaaaaccgt gtaccagacg
     2521 ctgccagcca agctgctatg gaggaaatac ccactgccgg agaacgcgga gaacatgtac
     2581 tatttctcgg agctggccct gaccctcaac gagcaggagg agggcgtggc gcccaccgac
     2641 agccgcctgc ggccggacca gcggctgatg gagaggggcc gctgggacga ggccaacacc
     2701 gagaagcagc gcctggagga gaagcagcgc ctgaaccggc gacggcggct ggagtcgtgc
     2761 acggccggct gtggcgggga ggaagagaag gagtcagatg gctattcgcc gctgtggttc
     2821 gagaagaggc tggacccgct gaccggggag atggcctgca tatacaaggg cggctactgg
     2881 gaggccaagg agaagaagga ctggcacatg tgccccaaca tcttctgagc cactcctgcg
     2941 gaaaatacag gcacctgcac tgcctgtcag acttttcttt aatgcacccg atttaataca
     3001 gaacccacca atgcgtgtgt gcgcacgcgc gtgaccacac cgcttaagaa ggggtaaggg
     3061 ctgacctggg ttcttgccag ccccaggtcg ccgggtcacg tgtgcccgtt gttatcattg
     3121 acttgggccc catgggcacc ctagttccca gttaccacaa ctcaggccgg ctggccgggc
     3181 catgggctgc ccaggtcact aaccccaacc cagggaggaa atatttccct cctagggagc
     3241 ctcttttgac ttttttaaga aaaaaaaata tccatttctt tccaacgatg aggtttagta
     3301 aatattttta gcacatcact tagaagactc actttccaag tgttcgttct tgccacagaa
     3361 cggttctggc aagaagcccg tttttaaaga cctgaggaag ccaggcccct ttgaatgggg
     3421 aacacttcaa acacagcccg gctttctagc tggactgtcc aagctccagg agcgcaacac
     3481 ccgcagagac agcaggaagc ctggctggcc ggcccagcat ggcatgcaga gcccgaaggg
     3541 ggaaggcagt caaaggcagc cgcccccccc cccccgtgcc aggccttggc catggtgggg
     3601 cagtatccca gtcccaaaga ggccaggaag ggctgaaagg cagggccctt aggtgcttcc
     3661 tgcccaagaa tcaggccccc aaatcagcaa taaggaacaa acccttcctt tagcctgggc
     3721 tggtgaccca ggctcccaac acctggcctc ccgccttgtc cttcggcggc atcagggtgc
     3781 ctcactccga agtcctgaca tctttatttg cctaatttat atatatatat gatatacaaa
     3841 tatatatgac atagctattt tgcttaaatt tctatgatac gtgaaagtga aaaatgatga
     3901 agacagactg cctgtctgag tttggcctcc tgccagcccc gccctctcct tgtagccctc
     3961 ccagtggctt ctgccaacct tagaaatgaa acctgcccct cagaccctct gcctccaacc
     4021 catctcactt cagtttgatc tggaaagttc attgcagggc ctttctttct actccaggcc
     4081 tggttttgtt ttttgttttg ttttttatta aaaaagaaaa agaaaacacc acgtatgaaa
     4141 tgccttacaa tgcccactct agagaggggg tgggaagggc gggggaggga aggtcactcg
     4201 gtctccctca gagctggaat gtaccccttc ccagcaggct gagcaagcaa gcaccttctg
     4261 atcataataa aaaccttggt tctggagttt tccaca
//
