LOCUS       XM_039104467            5399 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus origin recognition complex, subunit 4
            (Orc4), transcript variant X7, mRNA.
ACCESSION   XM_039104467
VERSION     XM_039104467.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5399
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5399
                     /gene="Orc4"
                     /note="origin recognition complex, subunit 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 35 ESTs, 5 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:295596"
                     /db_xref="RGD:735212"
     CDS             301..1668
                     /gene="Orc4"
                     /codon_start=1
                     /product="origin recognition complex subunit 4 isoform X2"
                     /protein_id="XP_038960395.1"
                     /db_xref="GeneID:295596"
                     /db_xref="RGD:735212"
                     /translation="MRFELVKMSNRKSKNNIHAECLSQVQRILRERFCHHTPHSNLFG
                     VQVQYKHLIELLKRTAIYGESNSLLIVGPRGSGKTTLLNHALKELMQIGDMSENVLQV
                     HLNGLLQTNDKIALKEITRQLNLENVVGDKVFGSFAENLSFLLEALQKGNRTSSCPVI
                     FILDEFDLFAHQKNQTLLYNLFDISQSAQTPIAVIGLTCRLLILRRSELLKVYFHDIL
                     ELLEKRVKSRFSHRQIHLMNSFDFPQYLKIFKEQLSLPAEFPDKIFAEKWNENAHCLS
                     EDSTVLEVLQKHFNVNKNLQSLHMLLMLALNRVTVTHPFMTSADLMEAQHLCSLDAKA
                     SIVHGLSVLEICLIIAMKHLNDIYEEEPFNFQMVYNEFQKFIQRKAHSVYNFEKPVVM
                     KAFEHLQQLELIKPMERTSVNSQREYQLVKLLLDNTQIMNALQKYSNCPTDVRQWATS
                     SLSWL"
ORIGIN      
        1 gccgagcacg gtgcatgctg ggagttgctg tgtgttcttg gctgccgcag gtgaaacaga
       61 gctgggaagg cggtgaacaa tcctgggtcc ttacagtcgg cggaggctgc ccgatttagg
      121 caggctttat tgagagagag agaaattttg tggggcactg gattatgaca ccagacagaa
      181 gatctggaga aacacaggct ggaacccctg tcttagactg ctttcgcctt ccctgagcaa
      241 catgtcagca cgcaggcatc cagcagcaag gcagaaacgc agaactgcaa aattttcttg
      301 atgagatttg agttagtcaa gatgagcaat cgtaaaagca agaataacat acatgcagag
      361 tgtctttccc aggtacaaag aattttacgt gaaaggtttt gtcatcatac tcctcatagc
      421 aacctatttg gagtgcaagt acaatacaag catttaattg agctactcaa aagaactgct
      481 atctatggag aaagtaattc tttactcatt gttggaccac gaggatcagg aaagaccacg
      541 ttattaaatc atgccttgaa agagctcatg caaataggag acatgagtga aaatgtgtta
      601 caagttcact taaatggact gctacagaca aatgataaaa ttgctctgaa agagatcaca
      661 agacaattaa atctagaaaa tgtagttgga gataaagttt ttggaagctt tgctgaaaac
      721 ctttcgtttc ttctggaagc tttgcagaaa ggtaaccgga ctagcagttg cccagtgatc
      781 ttcatactgg atgaatttga tctttttgct catcagaaaa accaaacact cctttataat
      841 ctttttgaca tttctcaatc tgcacagaca ccaatagcag ttattggcct tacatgtaga
      901 ctgttaattt taagaagatc agaacttctc aaagtttatt ttcatgatat tttggaactc
      961 ttagaaaaga gagtgaagtc acgattttct caccggcaga tacatttaat gaattcattt
     1021 gattttccgc aatatttgaa aatatttaaa gaacaattat ctctacctgc agaattccca
     1081 gataagattt ttgctgagaa atggaatgag aatgctcatt gtctctccga agattcaact
     1141 gtgcttgaag ttctacagaa gcatttcaat gtcaacaaaa acttgcaatc attacatatg
     1201 ctattgatgc ttgctttaaa tcgagtaacc gtgacacacc catttatgac ctcagcagat
     1261 ctgatggagg cgcagcactt gtgtagcttg gatgccaaag cgagtattgt acatggtctg
     1321 tcagtcttgg aaatctgtct tataatagca atgaaacatt taaatgacat atatgaagag
     1381 gagcccttta attttcaaat ggtgtataat gaatttcaga aattcattca aagaaaggcc
     1441 cattctgttt ataactttga gaaacctgtg gtcatgaagg catttgagca cttacaacaa
     1501 ttggaattaa taaaacccat ggaaagaacc tcagtcaatt ctcagagaga ataccagcta
     1561 gtcaaactac ttttggataa tactcagatt atgaatgccc tacagaaata ctccaactgc
     1621 cctacagatg tcaggcagtg ggcaacatcc tcgctcagct ggctgtgaag attttaagta
     1681 catttctgtg aagacctaaa actagtgttc tttaataaga tacgctacta cattactttg
     1741 tttataaata ttgtttatgg gaaacctgca cttagtatct tgactatgtt ttgaatattg
     1801 actgtgcatg gacagtttca ttaatttaaa ttacaccata caagtaacaa ttcaaaataa
     1861 taaaatgtgc ttattttacg ggtgatccat aagatgactt gatactcttg tgaaatgtat
     1921 gtggtccatt ggaaaggttc atttcaactc agcatttaca gatcttaatg ctaagcagtg
     1981 aggagagaaa taggaacagg aatgacatga ggaatattcc ggctagatta ggagcctgtg
     2041 gagagtgggg ttggtttggt tttctgagtt ggtttctata ggatcctgcc attttggatc
     2101 ctgtacagat ccccatggct gaagagctcg tgtggaaaga gtccaaacaa ttcagcattt
     2161 tcttctgtgc acatttcacc acaactggag gagtttttgt ttaatataca ttctgggtat
     2221 actttagttc aaaagggatc aaaattgcca tctaacaggt atcttaaagg attcctggta
     2281 actacttcca caaataagta ttcattccac agtgtgagct gttggctttg aattctctga
     2341 gaacaaggaa tgttggtcag agttcacttc ctaaatacat agacatagaa ctaacaggtt
     2401 gaaatagaat ataatctcag tgagttactt tgttgaagaa tatttgattg aatatttagt
     2461 tacagtaaga ttttataaaa tagagatccc ttctacttgc aacttgtaaa gtttctgcag
     2521 aattaaatgc tattttattt atagattagg aaactctcac cagtgtctga gtccaggatc
     2581 acagtatggg aatgacaggt gtgaccttga atgcagcttc ggttgactga cattaaagcc
     2641 aatgttgtta aaaactaaag cttagcaaca acgttttact atttttatag gatactgtaa
     2701 gaaataattt gacttttaag aaatcttaaa tataaatttc ctctgcatta atgtagtacc
     2761 tcatagttaa aacctacttt cttcatacac agccttttcc tttcttacaa taaaacatgt
     2821 ttagctttct atgctttttt taatcatgat aaaaatgaag ccatagtaac tatcaaggtc
     2881 atagaagtat agacgtagat gcccaatttt taaactactt tcaccttata agttgttcaa
     2941 acttcattat tagagaattc taaaatgaga aaaattagat tcttaaaaaa cctaagaatg
     3001 ttcaaggtgg aagtgtccgt ctataacata caatttcaca acttaagagt agaagcaaga
     3061 aaggtaaata cttttaggag gttccaaact agtcttgagt tatcccaaca agagcggagg
     3121 gggaggaatg attgtgaaca gaaagtctga ctggactttc tctgcagtga agagaattta
     3181 gagtctctgc tcaagacgcc ccctggccaa gagacgttaa aacagacaga aaagactttg
     3241 catgtttccc ttctaccgtg tggcctactg aaacttgggt cttgtttaaa aggcatctga
     3301 ttttatgcag acacatgtcg gaaaagttag actctcttgt tcagacttcc atatggtaat
     3361 gtcttgtaat gtaaggacat agtatccact gacccagaga gttagacatc gcagactgca
     3421 caatgggaaa ccgcgtttct gtaccagtga aacagtctga tcagactaca gtgggaggaa
     3481 aattccctaa ttcacaaact tccctgattt tttttaccct ctgtaagaac ataaatacac
     3541 agctaaagaa aaactgcatg tgcaaataat accatattca ttttttattt aacatgggga
     3601 tggaatgggg atagcataca ttttatttgt acaatattta acaatcactt attcaaggtg
     3661 ggattttatg gggatttttt tcatttttag ctttctgtta aatacttgca gaaaaaaaaa
     3721 tagcaagtac aatatgacag tagtacaaca acctgtgccc aaaacactga caagaaatac
     3781 agagtaaagc taaaataatt gtttcccaat attttgagag gtaacaaata gggagatacg
     3841 ggttgagact gcataaaaaa cgtactgctg gttgaatatc tgaggtaaat gatgtttaat
     3901 caagatgcta cttgtatctt tgtccataaa ttgtaaataa ttttatgcac attataccaa
     3961 atcttcctaa aaagtaattt ttcaaaaaag taaaaaagag aaactggaaa atatctgatg
     4021 aagcattttt ttaaaaaaca gtaatcagtc tattccacta aactaccatc tatctggtga
     4081 gggtattttt cccaaccatt tgaattttac ttaaatgtga cttaattatt aaggataaga
     4141 aaaagggcca gaagcgatgt tttcataatt ttgtgataca tgattctgtt tttaagtcca
     4201 aacgtatttg tttttgtttt tcctggttgt atttttagaa tatcaccatg aaagatagtg
     4261 caagttcatg ggaccaataa ttgtgaggca cagtctctgt tctggaattc acaaggtacc
     4321 tgtaataaaa catccaaaca agagtcacaa atcacatgct aaaactccta gcatctaaaa
     4381 cacatacaag atctgtgcag ggcatagata gacttcaaat aaattcaaac actggttact
     4441 ccgtcagtcc tgtggcagtt gatcataaag cattctcaca cgggagatct gggcaaggta
     4501 gagtaagagc agcagttctg gtgggtgtca gaaaggcaaa gtacaagaca tcatgagcac
     4561 catacacatg aaggtataca ggggtccaag tttgccatct ccctagaaat gaatcgtttt
     4621 cactctttga tctttctttt tcattgtccc taactcaaac tttctatctg cccactctgc
     4681 acttactgta aaccaaacac gaaaatgccc tgcaaaagaa agtcacaaga ctaggcataa
     4741 ggacaggtag tcactggaac attcttaacg ttactgctta taaaaaaggc tttcttgtta
     4801 atgtagttct taagagaata caagttttaa aattgataag ctagatttac atacaatacc
     4861 caagatttct aaaacataaa ttccctagcg tgaagacaaa gcattttata tcatgaacca
     4921 gtcttggtaa aatttatctg tagtgctttc ctaagccgaa cagtcataat atccctcatg
     4981 tatcagctct taaagggagt tgaatgttta caaccagtag cagtttgctt atggatgaaa
     5041 agtttccttg tatgcatatt ttcttatggt tttccttgat tacaagtgga agcaaacctg
     5101 aatcaaaaat ttgaggggcc aaatatgtag gaatatgtca aaaacagtga acactgaact
     5161 tggcaatctt aggaatacag tgacaccttg ggtacataga caacgtacaa ttctctatgg
     5221 tatgtggcat acagacaaga atgctattat cctccccact taaagtctgt tgacctatgt
     5281 attgtttatg attattcttc ccagagatta gtgcacatta tatgtaaaag gtagtgtctg
     5341 atgtcttaac catctgaaga taatgcattc acagtgagct cctgatagta acataacaa
//
