LOCUS       XM_039104460            5377 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus origin recognition complex, subunit 4
            (Orc4), transcript variant X1, mRNA.
ACCESSION   XM_039104460
VERSION     XM_039104460.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039104460.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5377
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5377
                     /gene="Orc4"
                     /note="origin recognition complex, subunit 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 35 ESTs, 4 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 42 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:295596"
                     /db_xref="RGD:735212"
     CDS             261..1646
                     /gene="Orc4"
                     /codon_start=1
                     /product="origin recognition complex subunit 4 isoform X1"
                     /protein_id="XP_038960388.1"
                     /db_xref="GeneID:295596"
                     /db_xref="RGD:735212"
                     /translation="MTPDRRSGFELVKMSNRKSKNNIHAECLSQVQRILRERFCHHTP
                     HSNLFGVQVQYKHLIELLKRTAIYGESNSLLIVGPRGSGKTTLLNHALKELMQIGDMS
                     ENVLQVHLNGLLQTNDKIALKEITRQLNLENVVGDKVFGSFAENLSFLLEALQKGNRT
                     SSCPVIFILDEFDLFAHQKNQTLLYNLFDISQSAQTPIAVIGLTCRLLILRRSELLKV
                     YFHDILELLEKRVKSRFSHRQIHLMNSFDFPQYLKIFKEQLSLPAEFPDKIFAEKWNE
                     NAHCLSEDSTVLEVLQKHFNVNKNLQSLHMLLMLALNRVTVTHPFMTSADLMEAQHLC
                     SLDAKASIVHGLSVLEICLIIAMKHLNDIYEEEPFNFQMVYNEFQKFIQRKAHSVYNF
                     EKPVVMKAFEHLQQLELIKPMERTSVNSQREYQLVKLLLDNTQIMNALQKYSNCPTDV
                     RQWATSSLSWL"
ORIGIN      
        1 gccgagcacg gtgcatgctg ggagttgctg tgtgttcttg gctgccgcag gtgaaacaga
       61 gctgggaagg cggtgaacaa tcctgggtcc ttacagtcgg cggaggctgc ccgatttagg
      121 caggctttat tgagagaggg ctgaccactt ggcactggat gaccatttag tatcctgagg
      181 aagactcctg tcttagcgtt actgttgctg tgttgttgtc tccatctgat tcagagagaa
      241 attttgtggg gcactggatt atgacaccag acagaagatc tggatttgag ttagtcaaga
      301 tgagcaatcg taaaagcaag aataacatac atgcagagtg tctttcccag gtacaaagaa
      361 ttttacgtga aaggttttgt catcatactc ctcatagcaa cctatttgga gtgcaagtac
      421 aatacaagca tttaattgag ctactcaaaa gaactgctat ctatggagaa agtaattctt
      481 tactcattgt tggaccacga ggatcaggaa agaccacgtt attaaatcat gccttgaaag
      541 agctcatgca aataggagac atgagtgaaa atgtgttaca agttcactta aatggactgc
      601 tacagacaaa tgataaaatt gctctgaaag agatcacaag acaattaaat ctagaaaatg
      661 tagttggaga taaagttttt ggaagctttg ctgaaaacct ttcgtttctt ctggaagctt
      721 tgcagaaagg taaccggact agcagttgcc cagtgatctt catactggat gaatttgatc
      781 tttttgctca tcagaaaaac caaacactcc tttataatct ttttgacatt tctcaatctg
      841 cacagacacc aatagcagtt attggcctta catgtagact gttaatttta agaagatcag
      901 aacttctcaa agtttatttt catgatattt tggaactctt agaaaagaga gtgaagtcac
      961 gattttctca ccggcagata catttaatga attcatttga ttttccgcaa tatttgaaaa
     1021 tatttaaaga acaattatct ctacctgcag aattcccaga taagattttt gctgagaaat
     1081 ggaatgagaa tgctcattgt ctctccgaag attcaactgt gcttgaagtt ctacagaagc
     1141 atttcaatgt caacaaaaac ttgcaatcat tacatatgct attgatgctt gctttaaatc
     1201 gagtaaccgt gacacaccca tttatgacct cagcagatct gatggaggcg cagcacttgt
     1261 gtagcttgga tgccaaagcg agtattgtac atggtctgtc agtcttggaa atctgtctta
     1321 taatagcaat gaaacattta aatgacatat atgaagagga gccctttaat tttcaaatgg
     1381 tgtataatga atttcagaaa ttcattcaaa gaaaggccca ttctgtttat aactttgaga
     1441 aacctgtggt catgaaggca tttgagcact tacaacaatt ggaattaata aaacccatgg
     1501 aaagaacctc agtcaattct cagagagaat accagctagt caaactactt ttggataata
     1561 ctcagattat gaatgcccta cagaaatact ccaactgccc tacagatgtc aggcagtggg
     1621 caacatcctc gctcagctgg ctgtgaagat tttaagtaca tttctgtgaa gacctaaaac
     1681 tagtgttctt taataagata cgctactaca ttactttgtt tataaatatt gtttatggga
     1741 aacctgcact tagtatcttg actatgtttt gaatattgac tgtgcatgga cagtttcatt
     1801 aatttaaatt acaccataca agtaacaatt caaaataata aaatgtgctt attttacggg
     1861 tgatccataa gatgacttga tactcttgtg aaatgtatgt ggtccattgg aaaggttcat
     1921 ttcaactcag catttacaga tcttaatgct aagcagtgag gagagaaata ggaacaggaa
     1981 tgacatgagg aatattccgg ctagattagg agcctgtgga gagtggggtt ggtttggttt
     2041 tctgagttgg tttctatagg atcctgccat tttggatcct gtacagatcc ccatggctga
     2101 agagctcgtg tggaaagagt ccaaacaatt cagcattttc ttctgtgcac atttcaccac
     2161 aactggagga gtttttgttt aatatacatt ctgggtatac tttagttcaa aagggatcaa
     2221 aattgccatc taacaggtat cttaaaggat tcctggtaac tacttccaca aataagtatt
     2281 cattccacag tgtgagctgt tggctttgaa ttctctgaga acaaggaatg ttggtcagag
     2341 ttcacttcct aaatacatag acatagaact aacaggttga aatagaatat aatctcagtg
     2401 agttactttg ttgaagaata tttgattgaa tatttagtta cagtaagatt ttataaaata
     2461 gagatccctt ctacttgcaa cttgtaaagt ttctgcagaa ttaaatgcta ttttatttat
     2521 agattaggaa actctcacca gtgtctgagt ccaggatcac agtatgggaa tgacaggtgt
     2581 gaccttgaat gcagcttcgg ttgactgaca ttaaagccaa tgttgttaaa aactaaagct
     2641 tagcaacaac gttttactat ttttatagga tactgtaaga aataatttga cttttaagaa
     2701 atcttaaata taaatttcct ctgcattaat gtagtacctc atagttaaaa cctactttct
     2761 tcatacacag ccttttcctt tcttacaata aaacatgttt agctttctat gcttttttta
     2821 atcatgataa aaatgaagcc atagtaacta tcaaggtcat agaagtatag acgtagatgc
     2881 ccaattttta aactactttc accttataag ttgttcaaac ttcattatta gagaattcta
     2941 aaatgagaaa aattagattc ttaaaaaacc taagaatgtt caaggtggaa gtgtccgtct
     3001 ataacataca atttcacaac ttaagagtag aagcaagaaa ggtaaatact tttaggaggt
     3061 tccaaactag tcttgagtta tcccaacaag agcggagggg gaggaatgat tgtgaacaga
     3121 aagtctgact ggactttctc tgcagtgaag agaatttaga gtctctgctc aagacgcccc
     3181 ctggccaaga gacgttaaaa cagacagaaa agactttgca tgtttccctt ctaccgtgtg
     3241 gcctactgaa acttgggtct tgtttaaaag gcatctgatt ttatgcagac acatgtcgga
     3301 aaagttagac tctcttgttc agacttccat atggtaatgt cttgtaatgt aaggacatag
     3361 tatccactga cccagagagt tagacatcgc agactgcaca atgggaaacc gcgtttctgt
     3421 accagtgaaa cagtctgatc agactacagt gggaggaaaa ttccctaatt cacaaacttc
     3481 cctgattttt tttaccctct gtaagaacat aaatacacag ctaaagaaaa actgcatgtg
     3541 caaataatac catattcatt ttttatttaa catggggatg gaatggggat agcatacatt
     3601 ttatttgtac aatatttaac aatcacttat tcaaggtggg attttatggg gatttttttc
     3661 atttttagct ttctgttaaa tacttgcaga aaaaaaaata gcaagtacaa tatgacagta
     3721 gtacaacaac ctgtgcccaa aacactgaca agaaatacag agtaaagcta aaataattgt
     3781 ttcccaatat tttgagaggt aacaaatagg gagatacggg ttgagactgc ataaaaaacg
     3841 tactgctggt tgaatatctg aggtaaatga tgtttaatca agatgctact tgtatctttg
     3901 tccataaatt gtaaataatt ttatgcacat tataccaaat cttcctaaaa agtaattttt
     3961 caaaaaagta aaaaagagaa actggaaaat atctgatgaa gcattttttt aaaaaacagt
     4021 aatcagtcta ttccactaaa ctaccatcta tctggtgagg gtatttttcc caaccatttg
     4081 aattttactt aaatgtgact taattattaa ggataagaaa aagggccaga agcgatgttt
     4141 tcataatttt gtgatacatg attctgtttt taagtccaaa cgtatttgtt tttgtttttc
     4201 ctggttgtat ttttagaata tcaccatgaa agatagtgca agttcatggg accaataatt
     4261 gtgaggcaca gtctctgttc tggaattcac aaggtacctg taataaaaca tccaaacaag
     4321 agtcacaaat cacatgctaa aactcctagc atctaaaaca catacaagat ctgtgcaggg
     4381 catagataga cttcaaataa attcaaacac tggttactcc gtcagtcctg tggcagttga
     4441 tcataaagca ttctcacacg ggagatctgg gcaaggtaga gtaagagcag cagttctggt
     4501 gggtgtcaga aaggcaaagt acaagacatc atgagcacca tacacatgaa ggtatacagg
     4561 ggtccaagtt tgccatctcc ctagaaatga atcgttttca ctctttgatc tttctttttc
     4621 attgtcccta actcaaactt tctatctgcc cactctgcac ttactgtaaa ccaaacacga
     4681 aaatgccctg caaaagaaag tcacaagact aggcataagg acaggtagtc actggaacat
     4741 tcttaacgtt actgcttata aaaaaggctt tcttgttaat gtagttctta agagaataca
     4801 agttttaaaa ttgataagct agatttacat acaataccca agatttctaa aacataaatt
     4861 ccctagcgtg aagacaaagc attttatatc atgaaccagt cttggtaaaa tttatctgta
     4921 gtgctttcct aagccgaaca gtcataatat ccctcatgta tcagctctta aagggagttg
     4981 aatgtttaca accagtagca gtttgcttat ggatgaaaag tttccttgta tgcatatttt
     5041 cttatggttt tccttgatta caagtggaag caaacctgaa tcaaaaattt gaggggccaa
     5101 atatgtagga atatgtcaaa aacagtgaac actgaacttg gcaatcttag gaatacagtg
     5161 acaccttggg tacatagaca acgtacaatt ctctatggta tgtggcatac agacaagaat
     5221 gctattatcc tccccactta aagtctgttg acctatgtat tgtttatgat tattcttccc
     5281 agagattagt gcacattata tgtaaaaggt agtgtctgat gtcttaacca tctgaagata
     5341 atgcattcac agtgagctcc tgatagtaac ataacaa
//
