LOCUS       XM_039109968            2710 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus origin recognition complex, subunit 1
            (Orc1), transcript variant X3, mRNA.
ACCESSION   XM_039109968
VERSION     XM_039109968.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039109968.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2710
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2710
                     /gene="Orc1"
                     /gene_synonym="Orc1l"
                     /note="origin recognition complex, subunit 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 6 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:313479"
                     /db_xref="RGD:631435"
     CDS             175..2391
                     /gene="Orc1"
                     /gene_synonym="Orc1l"
                     /codon_start=1
                     /product="origin recognition complex subunit 1 isoform X3"
                     /protein_id="XP_038965896.1"
                     /db_xref="GeneID:313479"
                     /db_xref="RGD:631435"
                     /translation="MPSYVTRQKTRQTFSWVGRPLPNRKQFYQMYKEICMKINGCSEI
                     HIKVGQFVLIQGEDNQKPYVAKLIELFENGSEVPPKKYARVQWFVRFCEIPIPKRHLL
                     GRRPSAQEIFWYDCSDCDNDIHVETIIGPVQVVALAPEDEIPVNQKSEETLFVKLSWN
                     KKNFAPLPPEELAALRRLECQKPLEAKTKSVKSPSWSTAEQEVKRIESSHSTSRSYQD
                     PAHTVTPNAMKSLECGGFTRKPNMRLSRKILCDSLDSQKTCKRRAAFSETTSPPKKPQ
                     PGEIKTSSALETLGKNGHTQPFFAKSSMVLRTRGTAVKTTKLTVESALSPVRSRSRYS
                     VAPSVGLTPQYIGRKAKEQETHKEPIHTSIRARRRSSLLTLKRIKQQLWLLDDDKSDQ
                     EEEESISSVEVSDSSSEEEDESVPSPPTGKPVGQSRTRRTASKPSSQTPSKSPKKTFR
                     PRPPLHATPQIRDRNLAVQEPASVLEEARLRLHVSAVPDSLPCREQEFQDIYSFVESK
                     LLDGTGGCMYISGVPGTGKTATVHEVIRCLQQAAQTNDVPPFEYVEVNGMKLTEPHQV
                     YVQILQKLTGQKATANHAAELLAKQFCSRGSQKETTVLLVDELDLLWTHKQDVLYNLF
                     DWPTHKGARLVVLTIANTMDLPERIMMNRVASRLGLTRMSFQPYSHSQLKQILVSRLK
                     HLKAFEDDAVQLVARKDPQLIPHLCQKSYLFSPPLLQATSFLFNQSEERECFQNVM"
ORIGIN      
        1 tcctctgact tccattccta gtcagctgag agcactgggt gcgcgttgca gctgtcgtct
       61 cctggcggag cccaaactgc acgagcgagc gttccacagc cccctcagtg cctggactgc
      121 aagtagtggg aagcggaggg ttaccgacag ccctaacaag cttcggtgag aaccatgccg
      181 tcctatgtca caaggcagaa gaccagacaa actttctcat gggttggcag gccattgccg
      241 aatcgaaaac agttctacca aatgtacaaa gaaatttgta tgaaaatcaa tggttgttct
      301 gagattcaca tcaaggttgg acagtttgta ttgattcaag gggaagataa tcaaaagccc
      361 tatgttgcta aactgattga attatttgaa aatgggtctg aagttcctcc caagaaatat
      421 gcgcgagtac aatggtttgt ccgattctgt gagattccta tccctaaaag gcatttgtta
      481 ggacggagac cttctgcaca ggagatattc tggtatgact gttctgactg tgataacgac
      541 attcatgtgg agaccatcat tggccctgtt caggtagtgg cattagcccc agaagacgag
      601 atccctgtga atcagaaaag tgaggagaca ctgtttgtga agctgtcctg gaataaaaag
      661 aactttgcgc cactgccacc agaagaactt gcagcattga ggagactgga gtgccaaaaa
      721 cctttagaag ccaagactaa gagtgttaaa agcccttcct ggagcacagc agaacaagag
      781 gtcaaaagga ttgaatcaag tcattccact tccagatctt accaggatcc tgctcatact
      841 gtcactccca acgcaatgaa gtctctggaa tgtggtggtt ttaccaggaa gcctaacatg
      901 aggctgtcac ggaagatctt gtgtgattcc ttggattctc aaaaaacatg taaacgaaga
      961 gcagccttct ctgagaccac ctcaccacct aaaaagcctc aacctggtga aatcaagacc
     1021 tcctcagctt tggaaactct aggaaaaaat gggcatactc aacccttttt tgccaaaagt
     1081 agcatggttc tgagaacccg gggcacagct gtgaagacca caaagcttac tgtggagagt
     1141 gcacttagcc ctgtcaggag caggtcgagg tactcagtgg caccctctgt gggtctgaca
     1201 cctcaataca ttgggaggaa ggcaaaagaa caagaaactc acaaagaacc catccatact
     1261 tctattcgtg cccgtagaag gagttctctc ttgactttga agcggattaa gcaacagctt
     1321 tggcttctag atgatgataa aagtgaccaa gaagaggaag agtccatatc ctctgtggaa
     1381 gtgtcagact ccagtagtga ggaggaagat gagtctgttc cctcccctcc aacaggaaaa
     1441 cccgtggggc agtccaggac ccggagaact gcctctaagc catcatcaca gaccccctcc
     1501 aagtcaccaa agaaaacttt tagacctaga ccacctcttc atgctactcc tcagatccga
     1561 gacagaaact tggctgtcca agagccagct agtgtgcttg aagaggcccg gctcaggctg
     1621 catgtttctg ccgtgcctga ctctcttccc tgtcgagagc aggagttcca agacatctac
     1681 agctttgtgg aaagtaaact tcttgatgga accggagggt gtatgtacat ttctggggtc
     1741 cctgggacag ggaagacagc cactgtgcat gaagtcatac gctgtctgca gcaggcagca
     1801 caaacaaatg atgttcctcc ctttgaatac gttgaggtta atgggatgaa gctgacagaa
     1861 ccccaccagg tctatgtgca gattttacag aaactgacag gccagaaggc aacagctaat
     1921 catgcagcag aactgctggc aaagcaattc tgcagccgag ggtcccagaa ggaaaccact
     1981 gtgctgcttg tggatgagct tgaccttctt tggactcaca aacaagatgt gttgtacaac
     2041 ctctttgatt ggcctactca caaaggagcc cggttggtcg tgttgactat tgccaatacc
     2101 atggaccttc cagagaggat catgatgaac cgtgtggcta gccgcctggg cctcaccagg
     2161 atgtctttcc aaccctactc tcacagccaa ctgaaacaaa tcttagtgtc ccgactgaag
     2221 catttaaagg cctttgagga tgatgccgtc cagttggtag ccagaaagga tcctcagctg
     2281 attccccatc tctgccagaa gtcctacctg ttctctcctc ctttgctaca ggccaccagc
     2341 tttttattca accaatcaga agagagggag tgttttcaaa atgtgatgta gccatatgaa
     2401 taacaatagc aaagtgtgtc tgcattcaac tgtcttcaca gaaatcagcc cttgaataga
     2461 accaagacca tctttacaca gtacacaaag actaccccag caagagccag tggttattta
     2521 cctgagttga caagtggaca ttggaaataa aatggtcctt cttataggta gcagcccttt
     2581 ctggagatgc ccggcgctgc ctggacatct gcaggcgtgc cacagagatc tgcgaggttt
     2641 cccatcagcg tggtgactct cagtgcctgg tgactgtggc ccacttaatg gaagctatag
     2701 atgaaatgtt
//
