LOCUS       XM_006238518            2536 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus origin recognition complex, subunit 1
            (Orc1), transcript variant X4, mRNA.
ACCESSION   XM_006238518
VERSION     XM_006238518.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006238518.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2536
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2536
                     /gene="Orc1"
                     /gene_synonym="Orc1l"
                     /note="origin recognition complex, subunit 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:313479"
                     /db_xref="RGD:631435"
     CDS             174..2285
                     /gene="Orc1"
                     /gene_synonym="Orc1l"
                     /codon_start=1
                     /product="origin recognition complex subunit 1 isoform X4"
                     /protein_id="XP_006238580.1"
                     /db_xref="GeneID:313479"
                     /db_xref="RGD:631435"
                     /translation="MPSYVTRQKTRQTFSWVGRPLPNRKQFYQMYKEICMKINGCSEI
                     HIKVGQFVLIQGEDNQKPYVAKLIELFENGSEVPPKKYARVQWFVRFCEIPIPKRHLL
                     GRRPSAQEIFWYDCSDCDNDIHVETIIGPVQVVALAPEDEIPVNQKSEETLFVKLSWN
                     KKNFAPLPPEELAALRRLECQKPLEAKTKSVKSPSWSTAEQEVKRIESSHSTSRSYQD
                     PAHTVTPNAMKSLECGGFTRKPNMRLSRKILCDSLDSQKTCKRRAAFSETTSPPKKPQ
                     PGEIKTSSALETLGKNGHTQPFFAKSSMVLRTRGTAVKTTKLTVESALSPVRSRSRYS
                     VAPSVGLTPQYIGRKAKEQETHKEPIHTSIRARRRSSLLTLKRIKQQLWLLDDDKSDQ
                     EEEESISSVEVSDSSSEEEDESVPSPPTGKPVGQSRTRRTASKPSSQTPSKSPKKTFR
                     PRPPLHATPQIRDRNLAVQEPASVLEEARLRLHVSAVPDSLPCREQEFQDIYSFVESK
                     LLDGTGGCMYISGVPGTGKTATVHEVIRCLQQAAQTNDVPPFEYVEVNGMKLTEPHQV
                     YVQILQKLTGQKATANHAAELLAKQFCSRGSQKETTVLLVDELDLLWTHKQDVLYNLF
                     DWPTHKGARLVVLTIANTMDLPERIMMNRVASRLGLTRMSFQPYSHSQLKQILVSRLK
                     HLKAFEDDAVQLVARKKSALE"
ORIGIN      
        1 cctctgactt ccattcctag tcagctgaga gcactgggtg cgcgttgcag ctgtcgtctc
       61 ctggcggagc ccaaactgca cgagcgagcg ttccacagcc ccctcagtgc ctggactgca
      121 agtagtggga agcggagggt taccgacagc cctaacaagc ttcggtgaga accatgccgt
      181 cctatgtcac aaggcagaag accagacaaa ctttctcatg ggttggcagg ccattgccga
      241 atcgaaaaca gttctaccaa atgtacaaag aaatttgtat gaaaatcaat ggttgttctg
      301 agattcacat caaggttgga cagtttgtat tgattcaagg ggaagataat caaaagccct
      361 atgttgctaa actgattgaa ttatttgaaa atgggtctga agttcctccc aagaaatatg
      421 cgcgagtaca atggtttgtc cgattctgtg agattcctat ccctaaaagg catttgttag
      481 gacggagacc ttctgcacag gagatattct ggtatgactg ttctgactgt gataacgaca
      541 ttcatgtgga gaccatcatt ggccctgttc aggtagtggc attagcccca gaagacgaga
      601 tccctgtgaa tcagaaaagt gaggagacac tgtttgtgaa gctgtcctgg aataaaaaga
      661 actttgcgcc actgccacca gaagaacttg cagcattgag gagactggag tgccaaaaac
      721 ctttagaagc caagactaag agtgttaaaa gcccttcctg gagcacagca gaacaagagg
      781 tcaaaaggat tgaatcaagt cattccactt ccagatctta ccaggatcct gctcatactg
      841 tcactcccaa cgcaatgaag tctctggaat gtggtggttt taccaggaag cctaacatga
      901 ggctgtcacg gaagatcttg tgtgattcct tggattctca aaaaacatgt aaacgaagag
      961 cagccttctc tgagaccacc tcaccaccta aaaagcctca acctggtgaa atcaagacct
     1021 cctcagcttt ggaaactcta ggaaaaaatg ggcatactca accctttttt gccaaaagta
     1081 gcatggttct gagaacccgg ggcacagctg tgaagaccac aaagcttact gtggagagtg
     1141 cacttagccc tgtcaggagc aggtcgaggt actcagtggc accctctgtg ggtctgacac
     1201 ctcaatacat tgggaggaag gcaaaagaac aagaaactca caaagaaccc atccatactt
     1261 ctattcgtgc ccgtagaagg agttctctct tgactttgaa gcggattaag caacagcttt
     1321 ggcttctaga tgatgataaa agtgaccaag aagaggaaga gtccatatcc tctgtggaag
     1381 tgtcagactc cagtagtgag gaggaagatg agtctgttcc ctcccctcca acaggaaaac
     1441 ccgtggggca gtccaggacc cggagaactg cctctaagcc atcatcacag accccctcca
     1501 agtcaccaaa gaaaactttt agacctagac cacctcttca tgctactcct cagatccgag
     1561 acagaaactt ggctgtccaa gagccagcta gtgtgcttga agaggcccgg ctcaggctgc
     1621 atgtttctgc cgtgcctgac tctcttccct gtcgagagca ggagttccaa gacatctaca
     1681 gctttgtgga aagtaaactt cttgatggaa ccggagggtg tatgtacatt tctggggtcc
     1741 ctgggacagg gaagacagcc actgtgcatg aagtcatacg ctgtctgcag caggcagcac
     1801 aaacaaatga tgttcctccc tttgaatacg ttgaggttaa tgggatgaag ctgacagaac
     1861 cccaccaggt ctatgtgcag attttacaga aactgacagg ccagaaggca acagctaatc
     1921 atgcagcaga actgctggca aagcaattct gcagccgagg gtcccagaag gaaaccactg
     1981 tgctgcttgt ggatgagctt gaccttcttt ggactcacaa acaagatgtg ttgtacaacc
     2041 tctttgattg gcctactcac aaaggagccc ggttggtcgt gttgactatt gccaatacca
     2101 tggaccttcc agagaggatc atgatgaacc gtgtggctag ccgcctgggc ctcaccagga
     2161 tgtctttcca accctactct cacagccaac tgaaacaaat cttagtgtcc cgactgaagc
     2221 atttaaaggc ctttgaggat gatgccgtcc agttggtagc cagaaagaaa tcagcccttg
     2281 aatagaacca agaccatctt tacacagtac acaaagacta ccccagcaag agccagtggt
     2341 tatttacctg agttgacaag tggacattgg aaataaaatg gtccttctta taggtagcag
     2401 ccctttctgg agatgcccgg cgctgcctgg acatctgcag gcgtgccaca gagatctgcg
     2461 aggtttccca tcagcgtggt gactctcagt gcctggtgac tgtggcccac ttaatggaag
     2521 ctatagatga aatgtt
//
