LOCUS       NM_001000443             933 bp    mRNA    linear   ROD 26-OCT-2024
DEFINITION  Rattus norvegicus olfactory receptor family 8 subfamily C member 19
            (Or8c19), mRNA.
ACCESSION   NM_001000443 XM_236071
VERSION     NM_001000443.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 933)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 933)
  AUTHORS   Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M.,
            Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C.,
            Burch,P.E., Okwuonu,G., Hines,S., Lewis,L., DeRamo,C., Delgado,O.,
            Dugan-Rocha,S., Miner,G., Morgan,M., Hawes,A., Gill,R., Celera,
            Holt,R.A., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
            Barnstead,M., Chin,S., Evans,C.A., Ferriera,S., Fosler,C.,
            Glodek,A., Gu,Z., Jennings,D., Kraft,C.L., Nguyen,T.,
            Pfannkoch,C.M., Sitter,C., Sutton,G.G., Venter,J.C., Woodage,T.,
            Smith,D., Lee,H.M., Gustafson,E., Cahill,P., Kana,A.,
            Doucette-Stamm,L., Weinstock,K., Fechtel,K., Weiss,R.B., Dunn,D.M.,
            Green,E.D., Blakesley,R.W., Bouffard,G.G., De Jong,P.J.,
            Osoegawa,K., Zhu,B., Marra,M., Schein,J., Bosdet,I., Fjell,C.,
            Jones,S., Krzywinski,M., Mathewson,C., Siddiqui,A., Wye,N.,
            McPherson,J., Zhao,S., Fraser,C.M., Shetty,J., Shatsman,S.,
            Geer,K., Chen,Y., Abramzon,S., Nierman,W.C., Havlak,P.H., Chen,R.,
            Durbin,K.J., Simons,R., Ren,Y., Song,X.Z., Li,B., Liu,Y., Qin,X.,
            Cawley,S., Worley,K.C., Cooney,A.J., D'Souza,L.M., Martin,K.,
            Wu,J.Q., Gonzalez-Garay,M.L., Jackson,A.R., Kalafus,K.J.,
            McLeod,M.P., Milosavljevic,A., Virk,D., Volkov,A., Wheeler,D.A.,
            Zhang,Z., Bailey,J.A., Eichler,E.E., Tuzun,E., Birney,E.,
            Mongin,E., Ureta-Vidal,A., Woodwark,C., Zdobnov,E., Bork,P.,
            Suyama,M., Torrents,D., Alexandersson,M., Trask,B.J., Young,J.M.,
            Huang,H., Wang,H., Xing,H., Daniels,S., Gietzen,D., Schmidt,J.,
            Stevens,K., Vitt,U., Wingrove,J., Camara,F., Mar Alba,M.,
            Abril,J.F., Guigo,R., Smit,A., Dubchak,I., Rubin,E.M., Couronne,O.,
            Poliakov,A., Hubner,N., Ganten,D., Goesele,C., Hummel,O.,
            Kreitler,T., Lee,Y.A., Monti,J., Schulz,H., Zimdahl,H.,
            Himmelbauer,H., Lehrach,H., Jacob,H.J., Bromberg,S.,
            Gullings-Handley,J., Jensen-Seaman,M.I., Kwitek,A.E., Lazar,J.,
            Pasko,D., Tonellato,P.J., Twigger,S., Ponting,C.P., Duarte,J.M.,
            Rice,S., Goodstadt,L., Beatson,S.A., Emes,R.D., Winter,E.E.,
            Webber,C., Brandt,P., Nyakatura,G., Adetobi,M., Chiaromonte,F.,
            Elnitski,L., Eswara,P., Hardison,R.C., Hou,M., Kolbe,D., Makova,K.,
            Miller,W., Nekrutenko,A., Riemer,C., Schwartz,S., Taylor,J.,
            Yang,S., Zhang,Y., Lindpaintner,K., Andrews,T.D., Caccamo,M.,
            Clamp,M., Clarke,L., Curwen,V., Durbin,R., Eyras,E., Searle,S.M.,
            Cooper,G.M., Batzoglou,S., Brudno,M., Sidow,A., Stone,E.A.,
            Venter,J.C., Payseur,B.A., Bourque,G., Lopez-Otin,C., Puente,X.S.,
            Chakrabarti,K., Chatterji,S., Dewey,C., Pachter,L., Bray,N.,
            Yap,V.B., Caspi,A., Tesler,G., Pevzner,P.A., Haussler,D.,
            Roskin,K.M., Baertsch,R., Clawson,H., Furey,T.S., Hinrichs,A.S.,
            Karolchik,D., Kent,W.J., Rosenbloom,K.R., Trumbower,H.,
            Weirauch,M., Cooper,D.N., Stenson,P.D., Ma,B., Brent,M.,
            Arumugam,M., Shteynberg,D., Copley,R.R., Taylor,M.S., Riethman,H.,
            Mudunuri,U., Peterson,J., Guyer,M., Felsenfeld,A., Old,S.,
            Mockrin,S. and Collins,F.
  CONSRTM   Rat Genome Sequencing Project Consortium
  TITLE     Genome sequence of the Brown Norway rat yields insights into
            mammalian evolution
  JOURNAL   Nature 428 (6982), 493-521 (2004)
   PUBMED   15057822
COMMENT     REVIEWED REFSEQ: This record has been curated by Janet Young and
            Barbara Trask (FHCRC). The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Aug 30, 2004 this sequence version replaced XM_236071.2.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-933               JAXUCZ010000008.1  47312007-47312939
FEATURES             Location/Qualifiers
     source          1..933
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q22"
     gene            1..933
                     /gene="Or8c19"
                     /gene_synonym="Olr1227; ratchr8-40448854-40449786_ORF"
                     /note="olfactory receptor family 8 subfamily C member 19"
                     /db_xref="GeneID:300552"
                     /db_xref="RGD:1333734"
     CDS             1..933
                     /gene="Or8c19"
                     /gene_synonym="Olr1227; ratchr8-40448854-40449786_ORF"
                     /note="olfactory receptor gene Olr1227; olfactory receptor
                     143-like; olfactory receptor 1227"
                     /codon_start=1
                     /product="olfactory receptor Olr1227"
                     /protein_id="NP_001000443.1"
                     /db_xref="GeneID:300552"
                     /db_xref="RGD:1333734"
                     /translation="MATENDSSVSEFILMGLTDQPELQLPLFALFLMNYTATMVGNLS
                     LMSLIFLNSNLHTPMYFFIFNLSFIDFWYSFVFTPKMLMKFFLEKNTISFKGCMTQLF
                     FFCFFVNSESYVLTAMAYDRYVAICKPLLYKAIMLPRICCLLMFMSYLMGFASAMILT
                     GFMFRLNFCRSNIINHYMCDIFPLLRISCTNTYVNELVSSAVVGTAIILCSLLILISY
                     ALILFNILHMSSGKGWSKALGTCGSHIITASLFYGSGLLAYVKPSSAKTVGQGKFLTV
                     FYTCLVPVLNPLIYSLQNKDVKIAVKKTLKRITS"
     exon            1..933
                     /gene="Or8c19"
                     /gene_synonym="Olr1227; ratchr8-40448854-40449786_ORF"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggctacag aaaatgactc ttcagtgtct gagtttattc ttatgggact gacagaccaa
       61 cctgagcttc agttgcccct gtttgctctg tttttgatga actacacagc caccatggtg
      121 ggaaacttga gcttaatgag tctcattttc ttgaattcaa accttcacac cccgatgtac
      181 tttttcatct tcaatttgtc cttcattgat ttttggtact catttgtctt tacccccaaa
      241 atgctgatga agtttttctt agagaagaac accatctcct tcaagggatg catgactcag
      301 ctttttttct tctgcttttt tgtgaactct gagagttatg tgttgacagc catggcttat
      361 gatcgctatg tggccatctg taagccttta ctgtacaagg ctatcatgtt acctaggatc
      421 tgttgtcttt tgatgtttat gtcatatttg atggggtttg ctagtgccat gatcctcaca
      481 ggctttatgt ttaggctcaa cttttgccgt agcaacatca tcaaccacta catgtgtgac
      541 attttccctc tccttcggat ctcctgcacg aacacctatg tcaatgagct tgtgagctct
      601 gctgtggtgg gtacagctat cattttatgt agcctcctta tcttaatctc ttatgctctg
      661 atccttttca atattcttca tatgtcttca ggtaagggtt ggtccaaagc cttgggcact
      721 tgtgggtccc acatcatcac tgctagcctc ttttatggat ctgggctgct tgcttatgtc
      781 aagccatcat ctgctaagac tgtgggccaa ggaaaatttc taacagtgtt ttatacatgt
      841 ctggtgcccg tgctaaatcc tcttatttat agtcttcaga acaaagatgt caaaattgct
      901 gtgaagaaaa cgttgaagag aatcacaagt taa
//
