LOCUS       NM_001000077             936 bp    mRNA    linear   ROD 24-OCT-2024
DEFINITION  Rattus norvegicus olfactory receptor family 6 subfamily C member
            213C (Or6c213c), mRNA.
ACCESSION   NM_001000077 XM_222444
VERSION     NM_001000077.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 936)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 936)
  AUTHORS   Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M.,
            Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C.,
            Burch,P.E., Okwuonu,G., Hines,S., Lewis,L., DeRamo,C., Delgado,O.,
            Dugan-Rocha,S., Miner,G., Morgan,M., Hawes,A., Gill,R., Celera,
            Holt,R.A., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
            Barnstead,M., Chin,S., Evans,C.A., Ferriera,S., Fosler,C.,
            Glodek,A., Gu,Z., Jennings,D., Kraft,C.L., Nguyen,T.,
            Pfannkoch,C.M., Sitter,C., Sutton,G.G., Venter,J.C., Woodage,T.,
            Smith,D., Lee,H.M., Gustafson,E., Cahill,P., Kana,A.,
            Doucette-Stamm,L., Weinstock,K., Fechtel,K., Weiss,R.B., Dunn,D.M.,
            Green,E.D., Blakesley,R.W., Bouffard,G.G., De Jong,P.J.,
            Osoegawa,K., Zhu,B., Marra,M., Schein,J., Bosdet,I., Fjell,C.,
            Jones,S., Krzywinski,M., Mathewson,C., Siddiqui,A., Wye,N.,
            McPherson,J., Zhao,S., Fraser,C.M., Shetty,J., Shatsman,S.,
            Geer,K., Chen,Y., Abramzon,S., Nierman,W.C., Havlak,P.H., Chen,R.,
            Durbin,K.J., Simons,R., Ren,Y., Song,X.Z., Li,B., Liu,Y., Qin,X.,
            Cawley,S., Worley,K.C., Cooney,A.J., D'Souza,L.M., Martin,K.,
            Wu,J.Q., Gonzalez-Garay,M.L., Jackson,A.R., Kalafus,K.J.,
            McLeod,M.P., Milosavljevic,A., Virk,D., Volkov,A., Wheeler,D.A.,
            Zhang,Z., Bailey,J.A., Eichler,E.E., Tuzun,E., Birney,E.,
            Mongin,E., Ureta-Vidal,A., Woodwark,C., Zdobnov,E., Bork,P.,
            Suyama,M., Torrents,D., Alexandersson,M., Trask,B.J., Young,J.M.,
            Huang,H., Wang,H., Xing,H., Daniels,S., Gietzen,D., Schmidt,J.,
            Stevens,K., Vitt,U., Wingrove,J., Camara,F., Mar Alba,M.,
            Abril,J.F., Guigo,R., Smit,A., Dubchak,I., Rubin,E.M., Couronne,O.,
            Poliakov,A., Hubner,N., Ganten,D., Goesele,C., Hummel,O.,
            Kreitler,T., Lee,Y.A., Monti,J., Schulz,H., Zimdahl,H.,
            Himmelbauer,H., Lehrach,H., Jacob,H.J., Bromberg,S.,
            Gullings-Handley,J., Jensen-Seaman,M.I., Kwitek,A.E., Lazar,J.,
            Pasko,D., Tonellato,P.J., Twigger,S., Ponting,C.P., Duarte,J.M.,
            Rice,S., Goodstadt,L., Beatson,S.A., Emes,R.D., Winter,E.E.,
            Webber,C., Brandt,P., Nyakatura,G., Adetobi,M., Chiaromonte,F.,
            Elnitski,L., Eswara,P., Hardison,R.C., Hou,M., Kolbe,D., Makova,K.,
            Miller,W., Nekrutenko,A., Riemer,C., Schwartz,S., Taylor,J.,
            Yang,S., Zhang,Y., Lindpaintner,K., Andrews,T.D., Caccamo,M.,
            Clamp,M., Clarke,L., Curwen,V., Durbin,R., Eyras,E., Searle,S.M.,
            Cooper,G.M., Batzoglou,S., Brudno,M., Sidow,A., Stone,E.A.,
            Venter,J.C., Payseur,B.A., Bourque,G., Lopez-Otin,C., Puente,X.S.,
            Chakrabarti,K., Chatterji,S., Dewey,C., Pachter,L., Bray,N.,
            Yap,V.B., Caspi,A., Tesler,G., Pevzner,P.A., Haussler,D.,
            Roskin,K.M., Baertsch,R., Clawson,H., Furey,T.S., Hinrichs,A.S.,
            Karolchik,D., Kent,W.J., Rosenbloom,K.R., Trumbower,H.,
            Weirauch,M., Cooper,D.N., Stenson,P.D., Ma,B., Brent,M.,
            Arumugam,M., Shteynberg,D., Copley,R.R., Taylor,M.S., Riethman,H.,
            Mudunuri,U., Peterson,J., Guyer,M., Felsenfeld,A., Old,S.,
            Mockrin,S. and Collins,F.
  CONSRTM   Rat Genome Sequencing Project Consortium
  TITLE     Genome sequence of the Brown Norway rat yields insights into
            mammalian evolution
  JOURNAL   Nature 428 (6982), 493-521 (2004)
   PUBMED   15057822
COMMENT     REVIEWED REFSEQ: This record has been curated by Janet Young and
            Barbara Trask (FHCRC). The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Aug 30, 2004 this sequence version replaced XM_222444.2.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-936               JAXUCZ010000007.1  5687731-5688666     c
FEATURES             Location/Qualifiers
     source          1..936
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q11"
     gene            1..936
                     /gene="Or6c213c"
                     /gene_synonym="Olr1000; ratchr7-6430339-6429404_ORF"
                     /note="olfactory receptor family 6 subfamily C member
                     213C"
                     /db_xref="GeneID:288891"
                     /db_xref="RGD:1334395"
     CDS             1..936
                     /gene="Or6c213c"
                     /gene_synonym="Olr1000; ratchr7-6430339-6429404_ORF"
                     /note="olfactory receptor gene Olr1000; olfactory receptor
                     1000"
                     /codon_start=1
                     /product="olfactory receptor Olr1000"
                     /protein_id="NP_001000077.1"
                     /db_xref="GeneID:288891"
                     /db_xref="RGD:1334395"
                     /translation="MKNQSVEIVFILLGLTDDPQLQILIFLFMFFNYILSLMGNLIII
                     FLTLLDLRLKTPMYFFLRNFSLLEIAFTTACIPRFLMSIITGDKTITYNACVAQLFFF
                     VLLLITEFYLLAAMSYDRYVAICRPLHYPIIMNSKVCHLLVISSWVTGFLSIFPPLML
                     GLKLEFCASKTVDHFLCDTSPVLQLSCTDTRFIEWIAFVVAVLTLIITLILVILSYTL
                     ILKTILKFPSAQQRRKAFSTCSSHMVVVSITYGSCIFMYIKTSAKERVTLNKGVAVLN
                     TSVAPLLNPFIYTLRNQQVKDAFKQVINRLCYSKL"
     exon            1..936
                     /gene="Or6c213c"
                     /gene_synonym="Olr1000; ratchr7-6430339-6429404_ORF"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgaaaaacc agtcagtaga gattgtgttc attttacttg gattgacaga tgatcctcag
       61 cttcaaattc tgatcttcct gtttatgttt ttcaattaca tcttgagcct aatggggaac
      121 ttaataatta tcttcctcac cctgctggat cttcgcctca agactccaat gtacttcttt
      181 ctccggaatt tctccctctt ggaaattgca ttcacaactg cctgtattcc acgattcttg
      241 atgagcatta tcactggaga caaaacaatt acctacaatg cttgtgtagc tcaattattc
      301 ttcttcgttc tactacttat tacagagttc tacctcctgg ctgccatgtc ctatgatcgc
      361 tatgtagcga tctgcagacc attacactac cccatcatca tgaacagcaa agtgtgccac
      421 ctactagtta tcagttcctg ggttactggg tttttatcca tctttcctcc tttaatgttg
      481 ggactcaaac tagaattctg tgcttcgaaa actgtagatc actttctgtg tgacacttct
      541 cctgtcctgc agttgtcttg cacagacaca cgtttcatag aatggattgc ttttgttgta
      601 gctgtactga cacttatcat caccttgatc ttagtgattc tctcctacac actcatcctt
      661 aaaactattc taaagtttcc ttcagctcaa caacggagaa aggccttttc cacctgctcc
      721 tcacatatgg ttgttgtctc cattacttat gggagttgca ttttcatgta cataaaaaca
      781 tcagccaaag agagggtgac tttaaataaa ggtgtagctg ttctcaatac ctctgtggcc
      841 ccactgctaa accctttcat ttacacccta aggaaccagc aggtgaagga tgctttcaag
      901 caggtgatta acagattgtg ttattctaaa ctgtga
//
