LOCUS       NM_001000732             945 bp    mRNA    linear   ROD 26-OCT-2024
DEFINITION  Rattus norvegicus olfactory receptor family 5 subfamily P member 78
            (Or5p78), mRNA.
ACCESSION   NM_001000732
VERSION     NM_001000732.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 945)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 945)
  AUTHORS   Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M.,
            Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C.,
            Burch,P.E., Okwuonu,G., Hines,S., Lewis,L., DeRamo,C., Delgado,O.,
            Dugan-Rocha,S., Miner,G., Morgan,M., Hawes,A., Gill,R., Celera,
            Holt,R.A., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
            Barnstead,M., Chin,S., Evans,C.A., Ferriera,S., Fosler,C.,
            Glodek,A., Gu,Z., Jennings,D., Kraft,C.L., Nguyen,T.,
            Pfannkoch,C.M., Sitter,C., Sutton,G.G., Venter,J.C., Woodage,T.,
            Smith,D., Lee,H.M., Gustafson,E., Cahill,P., Kana,A.,
            Doucette-Stamm,L., Weinstock,K., Fechtel,K., Weiss,R.B., Dunn,D.M.,
            Green,E.D., Blakesley,R.W., Bouffard,G.G., De Jong,P.J.,
            Osoegawa,K., Zhu,B., Marra,M., Schein,J., Bosdet,I., Fjell,C.,
            Jones,S., Krzywinski,M., Mathewson,C., Siddiqui,A., Wye,N.,
            McPherson,J., Zhao,S., Fraser,C.M., Shetty,J., Shatsman,S.,
            Geer,K., Chen,Y., Abramzon,S., Nierman,W.C., Havlak,P.H., Chen,R.,
            Durbin,K.J., Simons,R., Ren,Y., Song,X.Z., Li,B., Liu,Y., Qin,X.,
            Cawley,S., Worley,K.C., Cooney,A.J., D'Souza,L.M., Martin,K.,
            Wu,J.Q., Gonzalez-Garay,M.L., Jackson,A.R., Kalafus,K.J.,
            McLeod,M.P., Milosavljevic,A., Virk,D., Volkov,A., Wheeler,D.A.,
            Zhang,Z., Bailey,J.A., Eichler,E.E., Tuzun,E., Birney,E.,
            Mongin,E., Ureta-Vidal,A., Woodwark,C., Zdobnov,E., Bork,P.,
            Suyama,M., Torrents,D., Alexandersson,M., Trask,B.J., Young,J.M.,
            Huang,H., Wang,H., Xing,H., Daniels,S., Gietzen,D., Schmidt,J.,
            Stevens,K., Vitt,U., Wingrove,J., Camara,F., Mar Alba,M.,
            Abril,J.F., Guigo,R., Smit,A., Dubchak,I., Rubin,E.M., Couronne,O.,
            Poliakov,A., Hubner,N., Ganten,D., Goesele,C., Hummel,O.,
            Kreitler,T., Lee,Y.A., Monti,J., Schulz,H., Zimdahl,H.,
            Himmelbauer,H., Lehrach,H., Jacob,H.J., Bromberg,S.,
            Gullings-Handley,J., Jensen-Seaman,M.I., Kwitek,A.E., Lazar,J.,
            Pasko,D., Tonellato,P.J., Twigger,S., Ponting,C.P., Duarte,J.M.,
            Rice,S., Goodstadt,L., Beatson,S.A., Emes,R.D., Winter,E.E.,
            Webber,C., Brandt,P., Nyakatura,G., Adetobi,M., Chiaromonte,F.,
            Elnitski,L., Eswara,P., Hardison,R.C., Hou,M., Kolbe,D., Makova,K.,
            Miller,W., Nekrutenko,A., Riemer,C., Schwartz,S., Taylor,J.,
            Yang,S., Zhang,Y., Lindpaintner,K., Andrews,T.D., Caccamo,M.,
            Clamp,M., Clarke,L., Curwen,V., Durbin,R., Eyras,E., Searle,S.M.,
            Cooper,G.M., Batzoglou,S., Brudno,M., Sidow,A., Stone,E.A.,
            Venter,J.C., Payseur,B.A., Bourque,G., Lopez-Otin,C., Puente,X.S.,
            Chakrabarti,K., Chatterji,S., Dewey,C., Pachter,L., Bray,N.,
            Yap,V.B., Caspi,A., Tesler,G., Pevzner,P.A., Haussler,D.,
            Roskin,K.M., Baertsch,R., Clawson,H., Furey,T.S., Hinrichs,A.S.,
            Karolchik,D., Kent,W.J., Rosenbloom,K.R., Trumbower,H.,
            Weirauch,M., Cooper,D.N., Stenson,P.D., Ma,B., Brent,M.,
            Arumugam,M., Shteynberg,D., Copley,R.R., Taylor,M.S., Riethman,H.,
            Mudunuri,U., Peterson,J., Guyer,M., Felsenfeld,A., Old,S.,
            Mockrin,S. and Collins,F.
  CONSRTM   Rat Genome Sequencing Project Consortium
  TITLE     Genome sequence of the Brown Norway rat yields insights into
            mammalian evolution
  JOURNAL   Nature 428 (6982), 493-521 (2004)
   PUBMED   15057822
COMMENT     REVIEWED REFSEQ: This record has been curated by Janet Young and
            Barbara Trask (FHCRC). The reference sequence was derived from
            JAXUCZ010000001.1.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-945               JAXUCZ010000001.1  171906386-171907330
FEATURES             Location/Qualifiers
     source          1..945
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q33"
     gene            1..945
                     /gene="Or5p78"
                     /gene_synonym="Olr271"
                     /note="olfactory receptor family 5 subfamily P member 78"
                     /db_xref="GeneID:404988"
                     /db_xref="RGD:1332950"
     CDS             1..945
                     /gene="Or5p78"
                     /gene_synonym="Olr271"
                     /note="olfactory receptor gene Olr271; olfactory receptor
                     271"
                     /codon_start=1
                     /product="olfactory receptor Olr271"
                     /protein_id="NP_001000732.1"
                     /db_xref="GeneID:404988"
                     /db_xref="RGD:1332950"
                     /translation="MAFLEDGNHTAVTEFILLGLTDDPVLRVVLFTIILCIYLVTVSG
                     NLSTILLIRVSSQLHHPMYFFLSHLASADIGYSSSVTPNMLVNFLVEKNTISYLGCGI
                     QLGSGAFFGGVECFVLAAMAYDRFVAICSPLLYPTKMSTQVCVQLLVVAYISGFLNAS
                     SFTFSFFSFFFCGPNKINHFFCDFTPLVELSCSEDSVSIILATITVGIIILITVIVIA
                     VSYIYILITILKMHSTEGRQKAFSTCTSHLTAVTLFYGTITFIYVTPKSNYSTDQNKV
                     LSVFYMVVIPMLNPLIYSLRSNEIKGALKRQLGRKRFS"
     exon            1..945
                     /gene="Or5p78"
                     /gene_synonym="Olr271"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggcttttc tggaggatgg gaaccacact gcagtgacag agttcatttt attgggatta
       61 acagatgacc cagttcttag agtcgtcctt ttcaccatca tcctgtgcat ctacctggtg
      121 actgtgtctg ggaacctcag caccatcctt ctcatcagag tctcctccca gctccatcac
      181 cccatgtact tctttctcag ccacttggct tcagctgaca taggctactc atcttctgtc
      241 acacccaata tgcttgtcaa ctttttggtg gaaaaaaata ccatttcata cctaggatgc
      301 ggcatccagc ttggttcagg tgctttcttt gggggagttg agtgctttgt tctagctgcc
      361 atggcatatg atcgatttgt ggcaatctgt agcccactac tttatccaac caaaatgtca
      421 acacaagtct gtgtacagtt gcttgtagta gcatacataa gtggttttct taatgcctcc
      481 tcatttacct tttcattctt ttctttcttc ttctgtggac caaataaaat caatcacttt
      541 ttctgtgatt ttactccttt agttgaactc tcctgttctg aagacagtgt ctccattatt
      601 cttgccacta ttactgttgg cattatcatt ttaatcacag tgattgttat tgctgtctcc
      661 tatatttaca tcctcatcac catcctgaag atgcactcca ctgagggccg ccaaaaggcc
      721 ttctcaacct gcacctccca cctcaccgca gtcactctgt tctatggaac cattacattc
      781 atctatgtga cccccaagtc caactactcc acagaccaga acaaggtgtt atctgtattc
      841 tacatggtgg tgatccccat gttgaacccc ctcatctaca gcctgaggag taatgagatt
      901 aagggtgctc tgaagagaca acttggtagg aaaaggtttt cttag
//
