LOCUS       NM_001408747            1391 bp    mRNA    linear   ROD 26-OCT-2024
DEFINITION  Rattus norvegicus olfactory receptor family 5 subfamily P member 52
            (Or5p52), mRNA.
ACCESSION   NM_001408747
VERSION     NM_001408747.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1391)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760434
                              [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on single protein-coding
                                         transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-66                JAXUCZ010000001.1  171193967-171194032
            67-1391             JAXUCZ010000001.1  171195780-171197104
FEATURES             Location/Qualifiers
     source          1..1391
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q33"
     gene            1..1391
                     /gene="Or5p52"
                     /gene_synonym="Olfr472; Olr240;
                     ratchr1-165400853-165401785_ORF"
                     /note="olfactory receptor family 5 subfamily P member 52"
                     /db_xref="GeneID:293384"
                     /db_xref="RGD:1333958"
     exon            1..66
                     /gene="Or5p52"
                     /gene_synonym="Olfr472; Olr240;
                     ratchr1-165400853-165401785_ORF"
                     /inference="alignment:Splign:2.1.0"
     CDS             28..1017
                     /gene="Or5p52"
                     /gene_synonym="Olfr472; Olr240;
                     ratchr1-165400853-165401785_ORF"
                     /note="olfactory receptor gene Olr240; olfactory receptor
                     472; olfactory receptor 240"
                     /codon_start=1
                     /product="olfactory receptor Olr240"
                     /protein_id="NP_001395676.1"
                     /db_xref="GeneID:293384"
                     /db_xref="RGD:1333958"
                     /translation="MRRKTSEAQRARLEKFTQETEAGNHTTVAELVILGLTEDPKLCI
                     VFFVIFLGVYIITLVGNISIITLIRISSQLHTPMYLFLSHLAFVDVVFSSSVSVIMLM
                     ELLGHGLVLPVATCAAQLCITVSFGSAECFLLAAMAYDRYVAICSPLLYSTLMSSRVC
                     FLLLGVSYVGGCMNGWTFTGCVLSLSFCEPNQINHFFCDFSPLLKVSCSDVSIIGIIP
                     SISSGSIIVVTILVIAVSYIYILITILKMQSTEGRHKAFSTCTSHLTAVTLFYGTITF
                     IYVMPKSSYSTEQNKVLSLFYTVVIPMLNPLIYSLRNRDVKDALRKAIVRVYS"
     exon            67..1391
                     /gene="Or5p52"
                     /gene_synonym="Olfr472; Olr240;
                     ratchr1-165400853-165401785_ORF"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccacgaggaa gggtccaaga ggacaaaatg agaagaaaaa catcagaagc tcaaagagcc
       61 agattggaaa agttcacaca agagacagaa gctggaaacc acaccactgt ggcagagctc
      121 gtcatcttgg gactaacaga ggaccctaag ctgtgtatag tcttttttgt gatatttcta
      181 ggagtataca tcatcacttt agtaggcaat atcagcatca tcacattgat aagaatttcc
      241 tcccagctgc acacacccat gtatctattc ctcagccatc tggcttttgt agatgttgta
      301 ttttcaagct cagtctcagt cataatgctt atggagctcc ttggacatgg gctggtccta
      361 cctgtggcta cctgtgcagc tcagctctgt attacagtgt cgtttgggtc agctgagtgc
      421 ttccttctgg ctgccatggc ctatgatcgc tatgtagcaa tctgttcacc tctcctctac
      481 tctacactca tgtcctctag agtctgcttt ctattgttgg gggtgtccta tgttggtggc
      541 tgcatgaatg gttggacatt tactggttgt gtgttaagtc tgtccttctg tgaaccaaat
      601 cagataaatc actttttctg tgacttctcc cctttgctga aggtgtcttg ctcagatgtc
      661 tccattattg gaatcatccc ctctatctct tctggctcca ttattgtggt gacaattctt
      721 gtcatagctg tttcctacat ctacattctt atcactatcc tgaagatgca gtccactgag
      781 ggccgccaca aggccttctc cacctgtacc tcccacctca ctgcagtcac tctgttttat
      841 gggaccatta ccttcattta tgtgatgccc aagtcgagct actctactga acagaacaag
      901 gtgctctctt tattctacac agtggtcatt cctatgctca atcccctcat ttatagtctg
      961 aggaacaggg atgtaaagga tgctctaagg aaagcaattg tcagagtata ttcatagacc
     1021 ctcttgaatt caagtaattt gtcataattt tctttcctca tgtcagacct agcatctatc
     1081 acacgagact atactgaatg cttcatatta aaacctgtgt ctttgaacta ttcttacttt
     1141 tatgtatgta tgaatcattt gcaggactac ccgatgcccg tgaagtgata ggaatagtca
     1201 tttctactac agaacttctg caagatagca aatctcattg cctttatctt atttacgtag
     1261 caaacaacaa tttgtgccat ctacacgtca gactttttaa aaaattttat cttcatgcta
     1321 tatgaattta tttatttctc acaacaacaa ctaacaaagt agtaccttta tttaattttg
     1381 tggaaaaatt g
//
