LOCUS       NM_001000320             939 bp    mRNA    linear   ROD 24-OCT-2024
DEFINITION  Rattus norvegicus olfactory receptor family 5 subfamily J member 1
            (Or5j1), mRNA.
ACCESSION   NM_001000320 XM_230138
VERSION     NM_001000320.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 939)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     REVIEWED REFSEQ: This record has been curated by Janet Young and
            Barbara Trask (FHCRC). The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Aug 30, 2004 this sequence version replaced XM_230138.2.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-939               JAXUCZ010000003.1  92610614-92611552   c
FEATURES             Location/Qualifiers
     source          1..939
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q24"
     gene            1..939
                     /gene="Or5j1"
                     /gene_synonym="Olr539"
                     /note="olfactory receptor family 5 subfamily J member 1"
                     /db_xref="GeneID:295790"
                     /db_xref="RGD:1333285"
     CDS             1..939
                     /gene="Or5j1"
                     /gene_synonym="Olr539"
                     /note="olfactory receptor gene Olr539; olfactory receptor
                     539"
                     /codon_start=1
                     /product="olfactory receptor Olr539"
                     /protein_id="NP_001000320.1"
                     /db_xref="GeneID:295790"
                     /db_xref="RGD:1333285"
                     /translation="MANVNFTFVTEFILLGLTDRGEIKVFLFILFLLIYVISLVGNLG
                     LFMLIHITPKLHTPMYHFLRSLSFVDACYSSVFAPTLLLNFFVERERISFSACILQYF
                     LFASLLTTEGFLLAAMAFDRYMAIANPLTYTVAMTKLICVLLVLGSCLGGTITSLTHT
                     IGLMNLCFCGPNVISHFFCDLPPLLKLSCSDTSMNELLLLVFSGVIAMTTLLTVVLSY
                     IFIVAAILRIRSAAGRHKAFSTCASHLTAVTLFYGSISFSYIQPSSQYSLEQEKVVSI
                     FYTLVIPMLNPLIYSLRNKDVKDAVKRVIEIKHSLH"
     exon            1..939
                     /gene="Or5j1"
                     /gene_synonym="Olr539"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggcaaatg tcaacttcac atttgttact gagtttatcc ttttgggact gactgatcgt
       61 ggtgaaatca aggtgtttct ctttatattg ttccttttga tctacgtcat ttccttggtg
      121 ggaaatctgg gactgtttat gctgatccac ataactccca aactccatac acctatgtac
      181 cacttccttc gctctctgtc atttgttgat gcctgttatt catcagtatt tgcacccaca
      241 ttactactga acttctttgt tgaaagagag agaatctcat tctctgcttg catcctgcaa
      301 tatttcttgt ttgcatcact gcttactaca gagggctttc tcctggccgc aatggctttt
      361 gaccgttaca tggccattgc aaaccctcta acttacacag tggctatgac aaaattgata
      421 tgtgttctac tagtgctggg ttcatgctta ggagggacta tcacatcatt aacacataca
      481 attggcttaa tgaatctgtg cttttgtggc cctaatgtca tcagtcattt cttctgtgac
      541 cttcctcccc tgttgaagct gtcctgttct gacacctcca tgaatgaact gctgcttttg
      601 gtattctctg gagtcattgc catgactaca cttttgactg tggttctctc ttatatcttc
      661 attgttgctg ctattctgag gatccgttca gcagcaggca gacacaaagc cttctctacc
      721 tgtgcatccc atctaacagc tgtcacttta ttttatggtt ctatcagctt cagttacatt
      781 caaccaagtt ctcagtactc cttagagcaa gagaaggtgg tatccatatt ttataccctg
      841 gtgattccta tgttgaatcc actgatttac agtttaagga acaaagatgt aaaagatgct
      901 gtgaaaagag ttatagagat caaacattct ctgcattaa
//
