LOCUS       NM_001000257             948 bp    mRNA    linear   ROD 24-OCT-2024
DEFINITION  Rattus norvegicus olfactory receptor family 5 subfamily B member
            123B (Or5b123b), mRNA.
ACCESSION   NM_001000257 XM_219640
VERSION     NM_001000257.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 948)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 948)
  AUTHORS   Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M.,
            Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C.,
            Burch,P.E., Okwuonu,G., Hines,S., Lewis,L., DeRamo,C., Delgado,O.,
            Dugan-Rocha,S., Miner,G., Morgan,M., Hawes,A., Gill,R., Celera,
            Holt,R.A., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
            Barnstead,M., Chin,S., Evans,C.A., Ferriera,S., Fosler,C.,
            Glodek,A., Gu,Z., Jennings,D., Kraft,C.L., Nguyen,T.,
            Pfannkoch,C.M., Sitter,C., Sutton,G.G., Venter,J.C., Woodage,T.,
            Smith,D., Lee,H.M., Gustafson,E., Cahill,P., Kana,A.,
            Doucette-Stamm,L., Weinstock,K., Fechtel,K., Weiss,R.B., Dunn,D.M.,
            Green,E.D., Blakesley,R.W., Bouffard,G.G., De Jong,P.J.,
            Osoegawa,K., Zhu,B., Marra,M., Schein,J., Bosdet,I., Fjell,C.,
            Jones,S., Krzywinski,M., Mathewson,C., Siddiqui,A., Wye,N.,
            McPherson,J., Zhao,S., Fraser,C.M., Shetty,J., Shatsman,S.,
            Geer,K., Chen,Y., Abramzon,S., Nierman,W.C., Havlak,P.H., Chen,R.,
            Durbin,K.J., Simons,R., Ren,Y., Song,X.Z., Li,B., Liu,Y., Qin,X.,
            Cawley,S., Worley,K.C., Cooney,A.J., D'Souza,L.M., Martin,K.,
            Wu,J.Q., Gonzalez-Garay,M.L., Jackson,A.R., Kalafus,K.J.,
            McLeod,M.P., Milosavljevic,A., Virk,D., Volkov,A., Wheeler,D.A.,
            Zhang,Z., Bailey,J.A., Eichler,E.E., Tuzun,E., Birney,E.,
            Mongin,E., Ureta-Vidal,A., Woodwark,C., Zdobnov,E., Bork,P.,
            Suyama,M., Torrents,D., Alexandersson,M., Trask,B.J., Young,J.M.,
            Huang,H., Wang,H., Xing,H., Daniels,S., Gietzen,D., Schmidt,J.,
            Stevens,K., Vitt,U., Wingrove,J., Camara,F., Mar Alba,M.,
            Abril,J.F., Guigo,R., Smit,A., Dubchak,I., Rubin,E.M., Couronne,O.,
            Poliakov,A., Hubner,N., Ganten,D., Goesele,C., Hummel,O.,
            Kreitler,T., Lee,Y.A., Monti,J., Schulz,H., Zimdahl,H.,
            Himmelbauer,H., Lehrach,H., Jacob,H.J., Bromberg,S.,
            Gullings-Handley,J., Jensen-Seaman,M.I., Kwitek,A.E., Lazar,J.,
            Pasko,D., Tonellato,P.J., Twigger,S., Ponting,C.P., Duarte,J.M.,
            Rice,S., Goodstadt,L., Beatson,S.A., Emes,R.D., Winter,E.E.,
            Webber,C., Brandt,P., Nyakatura,G., Adetobi,M., Chiaromonte,F.,
            Elnitski,L., Eswara,P., Hardison,R.C., Hou,M., Kolbe,D., Makova,K.,
            Miller,W., Nekrutenko,A., Riemer,C., Schwartz,S., Taylor,J.,
            Yang,S., Zhang,Y., Lindpaintner,K., Andrews,T.D., Caccamo,M.,
            Clamp,M., Clarke,L., Curwen,V., Durbin,R., Eyras,E., Searle,S.M.,
            Cooper,G.M., Batzoglou,S., Brudno,M., Sidow,A., Stone,E.A.,
            Venter,J.C., Payseur,B.A., Bourque,G., Lopez-Otin,C., Puente,X.S.,
            Chakrabarti,K., Chatterji,S., Dewey,C., Pachter,L., Bray,N.,
            Yap,V.B., Caspi,A., Tesler,G., Pevzner,P.A., Haussler,D.,
            Roskin,K.M., Baertsch,R., Clawson,H., Furey,T.S., Hinrichs,A.S.,
            Karolchik,D., Kent,W.J., Rosenbloom,K.R., Trumbower,H.,
            Weirauch,M., Cooper,D.N., Stenson,P.D., Ma,B., Brent,M.,
            Arumugam,M., Shteynberg,D., Copley,R.R., Taylor,M.S., Riethman,H.,
            Mudunuri,U., Peterson,J., Guyer,M., Felsenfeld,A., Old,S.,
            Mockrin,S. and Collins,F.
  CONSRTM   Rat Genome Sequencing Project Consortium
  TITLE     Genome sequence of the Brown Norway rat yields insights into
            mammalian evolution
  JOURNAL   Nature 428 (6982), 493-521 (2004)
   PUBMED   15057822
COMMENT     REVIEWED REFSEQ: This record has been curated by Janet Young and
            Barbara Trask (FHCRC). The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Aug 30, 2004 this sequence version replaced XM_219640.2.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-948               JAXUCZ010000001.1  219768225-219769172
FEATURES             Location/Qualifiers
     source          1..948
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..948
                     /gene="Or5b123b"
                     /gene_synonym="Olr357; ratchr1-216468017-216468964_ORF"
                     /note="olfactory receptor family 5 subfamily B member
                     123B"
                     /db_xref="GeneID:293794"
                     /db_xref="RGD:1333477"
     CDS             1..948
                     /gene="Or5b123b"
                     /gene_synonym="Olr357; ratchr1-216468017-216468964_ORF"
                     /note="olfactory receptor gene Olr357; olfactory receptor
                     357"
                     /codon_start=1
                     /product="olfactory receptor Olr357"
                     /protein_id="NP_001000257.1"
                     /db_xref="GeneID:293794"
                     /db_xref="RGD:1333477"
                     /translation="MMQNNSELTEFILVGLTDVQFLQVPLFIIFTLIYLTTLVGNLGM
                     ILLIILDSRLHTPMYFFLSNLSFADCVYASAVTPKVIEGFLTEDKIISYNACAAQMFF
                     FGVFAIIESFLLASMAYDCHAAVCKPLHYSTTMTTMICSLLLAGSYVSGILQSSIHVA
                     FTFHLSFCHSNVVNHFFCDIPPLLSLSCSSIYTNEIVLFMLAAFDVGFTLLVILTSYL
                     LIFVAILRMNSAESRKKAISTCSSHLTTVSIFYGTIIFMYLQPSSSHSMDTDKMASVF
                     YTMVIPMLNPIVYSLRNKEVKNAFKKVARKALSSLGLVN"
     exon            1..948
                     /gene="Or5b123b"
                     /gene_synonym="Olr357; ratchr1-216468017-216468964_ORF"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgatgcaga ataattcaga actgactgaa tttattcttg ttgggttaac agatgttcaa
       61 tttctgcaag ttcctttatt tattatcttc actctcattt atttgaccac attggttggg
      121 aatcttggga tgattttgtt gattatcttg gactccagac tacacactcc catgtacttt
      181 ttcctcagta acctctcctt tgcagactgt gtttatgcct cagctgtcac tcccaaggta
      241 atagaagggt ttctcacaga agataagatc atatcctaca atgcatgtgc tgctcaaatg
      301 ttcttctttg gagtctttgc tattattgag agttttctcc tggcctcaat ggcatatgac
      361 tgtcatgcag cagtgtgcaa acccttgcat tattccacca ccatgacaac tatgatatgt
      421 tccctgcttc ttgctggatc atacgtcagt ggaatcttac aatcttccat ccatgttgct
      481 ttcactttcc atctttcctt ctgtcattcc aatgtggtaa atcacttttt ctgtgatatt
      541 cccccactat tatctctttc ttgctccagt atttacacaa atgaaattgt actgttcatg
      601 ttggcagcat tcgatgttgg ttttactctg ttggttatct tgacttctta cttactcatt
      661 tttgttgcaa ttctgagaat gaactctgct gagagccgga agaaggccat ttccacctgt
      721 tcttcccacc ttaccacagt ttccattttc tatggcacaa ttatcttcat gtacttacag
      781 cccagctcca gtcactccat ggacactgac aaaatggcat ctgtgttcta cactatggtc
      841 atccccatgc tgaaccctat tgtatacagt ctgagaaata aagaagtcaa gaatgcattc
      901 aagaaggttg ctagaaaagc tttgtcttca ctgggattag tcaattag
//
