LOCUS       NM_001000321             939 bp    mRNA    linear   ROD 26-OCT-2024
DEFINITION  Rattus norvegicus olfactory receptor family 5 subfamily AQ member
            1B (Or5aq1), mRNA.
ACCESSION   NM_001000321 XM_230140
VERSION     NM_001000321.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 939)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     REVIEWED REFSEQ: This record has been curated by Janet Young and
            Barbara Trask (FHCRC). The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Aug 30, 2004 this sequence version replaced XM_230140.2.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-939               JAXUCZ010000003.1  92653554-92654492   c
FEATURES             Location/Qualifiers
     source          1..939
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q24"
     gene            1..939
                     /gene="Or5aq1"
                     /gene_synonym="Olr540"
                     /note="olfactory receptor family 5 subfamily AQ member 1B"
                     /db_xref="GeneID:295792"
                     /db_xref="RGD:1333789"
     CDS             1..939
                     /gene="Or5aq1"
                     /gene_synonym="Olr540"
                     /note="olfactory receptor gene Olr540; olfactory receptor
                     540"
                     /codon_start=1
                     /product="olfactory receptor Olr540"
                     /protein_id="NP_001000321.1"
                     /db_xref="GeneID:295792"
                     /db_xref="RGD:1333789"
                     /translation="MRLWNHTGVKEFILVGLTENLNWQVGLLFLFSIIYFIILVGNWG
                     MILLIWLNAHLHTPMYFFLSNLSFCDICYSTVIAPKMLINFLSKYKSSTFFGCVIQSF
                     FFAVYITTEGILLSMMAYDRYVAIANPLMYTVIMTHSICSQMVLVCYLGGLINSLTHT
                     IGLLRLDFCGPNIVDHFFCDIPPLLKLSCSDAHINEMLLLVFSGVIAIFTFIIVMVSY
                     IQIIIAILRIRSAEGRRKAFSTCASHLTAVTLFYGSVTFSYIQPSSQYSMEQEKVSAV
                     FYTLVIPMLNPLIYSLRNKDVKEAAKRSVCRERSGP"
     exon            1..939
                     /gene="Or5aq1"
                     /gene_synonym="Olr540"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgagactct ggaatcatac aggtgtgaaa gaattcatac tagtcggatt gacagaaaac
       61 cttaattggc aagtcggact ccttttcctt ttcagtataa tttattttat cattcttgtg
      121 ggtaactggg ggatgattct cttgatctgg ttgaatgccc atcttcatac tccaatgtac
      181 ttctttctta gtaacctctc tttttgtgat atctgctatt ctactgtcat tgctcctaaa
      241 atgctcatta atttcctgtc aaaatacaag tctagcacat tctttggttg tgttattcag
      301 agtttctttt ttgcagtgta tataactaca gaaggtatac tcttgtctat gatggcttat
      361 gatcgttatg tggcaattgc aaacccctta atgtatacag ttattatgac acacagcatc
      421 tgcagtcaga tggttcttgt atgttacttg ggtggcctta ttaattccct gactcacaca
      481 ataggtttac ttagactgga cttctgtggt cccaacattg tagaccattt cttctgtgac
      541 atccctcctc ttttgaagct ttcatgttct gatgcacaca tcaatgagat gctgcttttg
      601 gtcttctctg gagtgattgc tattttcact ttcatcattg tcatggtgtc ctatattcaa
      661 attatcattg ccatcctgag aatccgctca gctgagggaa ggcgcaaagc cttctccacg
      721 tgtgcctcac atctaacagc tgtgacatta ttttacggtt ctgtgacatt tagctatatc
      781 cagccaagtt ctcagtactc catggaacag gaaaaagtct ctgctgtgtt ttacaccttg
      841 gtcatcccca tgctgaaccc tctaatttac agcctgagga acaaagatgt gaaagaggca
      901 gccaagaggt cagtttgtag ggagaggagt ggcccttga
//
