LOCUS       NM_001000685             942 bp    mRNA    linear   ROD 26-OCT-2024
DEFINITION  Rattus norvegicus olfactory receptor family 5 subfamily AL member 1
            (Or5al1), mRNA.
ACCESSION   NM_001000685
VERSION     NM_001000685.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 942)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     REVIEWED REFSEQ: This record has been curated by Janet Young and
            Barbara Trask (FHCRC). The reference sequence was derived from
            JAXUCZ010000003.1.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-942               JAXUCZ010000003.1  91563871-91564812   c
FEATURES             Location/Qualifiers
     source          1..942
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q24"
     gene            1..942
                     /gene="Or5al1"
                     /gene_synonym="Olr480"
                     /note="olfactory receptor family 5 subfamily AL member 1"
                     /db_xref="GeneID:404890"
                     /db_xref="RGD:1333774"
     CDS             1..942
                     /gene="Or5al1"
                     /gene_synonym="Olr480"
                     /note="olfactory receptor gene Olr480; olfactory receptor
                     480"
                     /codon_start=1
                     /product="olfactory receptor Olr480"
                     /protein_id="NP_001000685.1"
                     /db_xref="GeneID:404890"
                     /db_xref="RGD:1333774"
                     /translation="MVKSNHSAVSEFVLVGLTDDPKLQVSLFGVFLVIYLTSVVGNIG
                     LIVLIQVSPQLHTPMYFFLTHLAFIDFCFTSSVTPNTLLNFLREVKSITFYACATQLC
                     CFVTFVVCELYLLSIMAYDRYVAIWNPLLYAVLMPRKLCLQVIASTYIYGFTVGLAQA
                     VETFRLSFCGSNVVNHFYCDDVPLVALACSDTHVKELMLLIIAGFNTLCSLVIVVISY
                     ICIVFAILRIHSAEGRRKAFSTCASHLTSITIFYGTVSFMYLQPKSSHSLNTDKFASV
                     FYVVVIPMLNPLIYSLRNQEVKSALKKIVEKLTLAIK"
     exon            1..942
                     /gene="Or5al1"
                     /gene_synonym="Olr480"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggttaaga gcaatcactc tgcagtgtct gagttcgtcc ttgtggggct cacagacgac
       61 cccaagcttc aggtcagtct cttcggtgtg tttctagtca tctacttaac tagtgttgta
      121 ggtaatattg gattgattgt gttaattcag gtgagtcctc agcttcatac acccatgtat
      181 ttcttcctga cccatctggc ttttattgac ttttgtttta cttcttctgt cactccaaac
      241 actctattaa attttctacg tgaagttaaa agcataacct tctatgcatg tgccactcag
      301 ttgtgctgct ttgtcacttt tgtagtttgt gaactgtact tgctgtcaat catggcctat
      361 gacaggtatg tggccatctg gaaccctctc ctctatgcag tcctcatgcc taggaagctc
      421 tgtcttcagg tcatcgccag cacatacatt tatggattca ctgttggact tgcacaggca
      481 gtggagacct tccgcttgtc tttttgtggc tccaatgtag ttaaccactt ctactgtgat
      541 gatgttccct tagttgctct ggcctgttct gacactcatg tcaaagagct gatgttgcta
      601 atcattgcgg gcttcaacac cctttgctct ctggtgattg tggtcatttc ttacatctgt
      661 attgtctttg ccatcctgag gattcattct gctgaaggaa gaaggaaagc cttttccacc
      721 tgtgcatccc acctgacttc tatcaccata ttttatggaa cagttagttt tatgtacctg
      781 cagcccaagt caagccattc tctgaacaca gataaatttg cttctgtgtt ttatgtggta
      841 gtaattccca tgttaaaccc actgatctac agcttgagaa atcaggaggt aaaaagtgct
      901 ctgaagaaaa ttgtagaaaa gttaacttta gcgatcaagt aa
//
