LOCUS       NM_001000742             948 bp    mRNA    linear   ROD 24-OCT-2024
DEFINITION  Rattus norvegicus olfactory receptor family 52 subfamily Z member
            13 (Or52z13), mRNA.
ACCESSION   NM_001000742
VERSION     NM_001000742.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 948)
  AUTHORS   Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M.,
            Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C.,
            Burch,P.E., Okwuonu,G., Hines,S., Lewis,L., DeRamo,C., Delgado,O.,
            Dugan-Rocha,S., Miner,G., Morgan,M., Hawes,A., Gill,R., Celera,
            Holt,R.A., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
            Barnstead,M., Chin,S., Evans,C.A., Ferriera,S., Fosler,C.,
            Glodek,A., Gu,Z., Jennings,D., Kraft,C.L., Nguyen,T.,
            Pfannkoch,C.M., Sitter,C., Sutton,G.G., Venter,J.C., Woodage,T.,
            Smith,D., Lee,H.M., Gustafson,E., Cahill,P., Kana,A.,
            Doucette-Stamm,L., Weinstock,K., Fechtel,K., Weiss,R.B., Dunn,D.M.,
            Green,E.D., Blakesley,R.W., Bouffard,G.G., De Jong,P.J.,
            Osoegawa,K., Zhu,B., Marra,M., Schein,J., Bosdet,I., Fjell,C.,
            Jones,S., Krzywinski,M., Mathewson,C., Siddiqui,A., Wye,N.,
            McPherson,J., Zhao,S., Fraser,C.M., Shetty,J., Shatsman,S.,
            Geer,K., Chen,Y., Abramzon,S., Nierman,W.C., Havlak,P.H., Chen,R.,
            Durbin,K.J., Simons,R., Ren,Y., Song,X.Z., Li,B., Liu,Y., Qin,X.,
            Cawley,S., Worley,K.C., Cooney,A.J., D'Souza,L.M., Martin,K.,
            Wu,J.Q., Gonzalez-Garay,M.L., Jackson,A.R., Kalafus,K.J.,
            McLeod,M.P., Milosavljevic,A., Virk,D., Volkov,A., Wheeler,D.A.,
            Zhang,Z., Bailey,J.A., Eichler,E.E., Tuzun,E., Birney,E.,
            Mongin,E., Ureta-Vidal,A., Woodwark,C., Zdobnov,E., Bork,P.,
            Suyama,M., Torrents,D., Alexandersson,M., Trask,B.J., Young,J.M.,
            Huang,H., Wang,H., Xing,H., Daniels,S., Gietzen,D., Schmidt,J.,
            Stevens,K., Vitt,U., Wingrove,J., Camara,F., Mar Alba,M.,
            Abril,J.F., Guigo,R., Smit,A., Dubchak,I., Rubin,E.M., Couronne,O.,
            Poliakov,A., Hubner,N., Ganten,D., Goesele,C., Hummel,O.,
            Kreitler,T., Lee,Y.A., Monti,J., Schulz,H., Zimdahl,H.,
            Himmelbauer,H., Lehrach,H., Jacob,H.J., Bromberg,S.,
            Gullings-Handley,J., Jensen-Seaman,M.I., Kwitek,A.E., Lazar,J.,
            Pasko,D., Tonellato,P.J., Twigger,S., Ponting,C.P., Duarte,J.M.,
            Rice,S., Goodstadt,L., Beatson,S.A., Emes,R.D., Winter,E.E.,
            Webber,C., Brandt,P., Nyakatura,G., Adetobi,M., Chiaromonte,F.,
            Elnitski,L., Eswara,P., Hardison,R.C., Hou,M., Kolbe,D., Makova,K.,
            Miller,W., Nekrutenko,A., Riemer,C., Schwartz,S., Taylor,J.,
            Yang,S., Zhang,Y., Lindpaintner,K., Andrews,T.D., Caccamo,M.,
            Clamp,M., Clarke,L., Curwen,V., Durbin,R., Eyras,E., Searle,S.M.,
            Cooper,G.M., Batzoglou,S., Brudno,M., Sidow,A., Stone,E.A.,
            Venter,J.C., Payseur,B.A., Bourque,G., Lopez-Otin,C., Puente,X.S.,
            Chakrabarti,K., Chatterji,S., Dewey,C., Pachter,L., Bray,N.,
            Yap,V.B., Caspi,A., Tesler,G., Pevzner,P.A., Haussler,D.,
            Roskin,K.M., Baertsch,R., Clawson,H., Furey,T.S., Hinrichs,A.S.,
            Karolchik,D., Kent,W.J., Rosenbloom,K.R., Trumbower,H.,
            Weirauch,M., Cooper,D.N., Stenson,P.D., Ma,B., Brent,M.,
            Arumugam,M., Shteynberg,D., Copley,R.R., Taylor,M.S., Riethman,H.,
            Mudunuri,U., Peterson,J., Guyer,M., Felsenfeld,A., Old,S.,
            Mockrin,S. and Collins,F.
  CONSRTM   Rat Genome Sequencing Project Consortium
  TITLE     Genome sequence of the Brown Norway rat yields insights into
            mammalian evolution
  JOURNAL   Nature 428 (6982), 493-521 (2004)
   PUBMED   15057822
COMMENT     REVIEWED REFSEQ: This record has been curated by Janet Young and
            Barbara Trask (FHCRC). The reference sequence was derived from
            JAXUCZ010000001.1.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-948               JAXUCZ010000001.1  167370752-167371699
FEATURES             Location/Qualifiers
     source          1..948
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q32"
     gene            1..948
                     /gene="Or52z13"
                     /gene_synonym="Olr111"
                     /note="olfactory receptor family 52 subfamily Z member 13"
                     /db_xref="GeneID:405006"
                     /db_xref="RGD:1333560"
     CDS             1..948
                     /gene="Or52z13"
                     /gene_synonym="Olr111"
                     /note="olfactory receptor gene Olr111; olfactory receptor
                     111"
                     /codon_start=1
                     /product="olfactory receptor Olr111"
                     /protein_id="NP_001000742.1"
                     /db_xref="GeneID:405006"
                     /db_xref="RGD:1333560"
                     /translation="MIMSSNHTNLRDIWYTMIGIPGLEDIHLWLSIPICSMYIVALIG
                     NTLLILLIFTEHSLHEPMYLFLSMLALADIILSTVTTPKVLAIFWFQAGGISFASCVS
                     QMFFLHFMFVTESAILLTMAFDRYVAICYPLRYTTILTPSVICRIGIVSVSRSFFICF
                     PLVFLVYRLTYCGRSIIHHSYCEHMGIARLACDSIKVNIYYGMTVPLFSIGLDIVLII
                     ISYTLILHTVFRIPSQSAQLKALGTCGSHVCVILLFYTPSLFTFFAHRFGGHSIPRHM
                     HILFANLYVVVPPTLNPIIYGVKTKQIQDRFFQMFSCIH"
     exon            1..948
                     /gene="Or52z13"
                     /gene_synonym="Olr111"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgataatgt cttcaaatca caccaacctt agagacattt ggtacaccat gattggtatc
       61 ccaggattag aagatataca cctttggctc tccatcccca tctgttcaat gtacatagtg
      121 gccctaatag gcaataccct attaatactc ctgatcttca cagaacacag ccttcatgaa
      181 ccaatgtacc ttttcctctc catgttggcc ctagctgaca tcattctatc tacagtgacc
      241 acaccaaagg ttcttgccat cttttggttt caagctggag gcatttcttt cgctagctgt
      301 gtgtctcaga tgttttttct gcacttcatg tttgtaacag agtcagccat actgctgact
      361 atggcatttg accgttatgt agccatctgc tatccactaa gatataccac cattctaacc
      421 ccatcagtaa tctgcagaat aggcatcgta tctgtgagta gaagcttctt catctgtttt
      481 cccttggtct ttctagttta tcgactcact tattgtggca ggagcatcat ccatcattca
      541 tactgtgaac acatgggcat tgctaggttg gcctgtgaca gcatcaaagt gaatatttac
      601 tatggaatga ctgtgccttt attttctata ggtctagaca ttgtgcttat aataatctcc
      661 tacaccctta tactccatac ggtgtttaga ataccttctc aaagtgccca actcaaggct
      721 ctgggtacgt gtggctccca tgtctgtgtc atccttctgt tctatacacc ttctctcttt
      781 accttttttg ctcaccgttt tgggggccac agcataccac gtcacatgca cattcttttt
      841 gctaacctct atgtggtggt accccctact ctcaacccta taatatatgg agtgaagaca
      901 aagcaaattc aagacaggtt tttccagatg ttttcttgca ttcactaa
//
