LOCUS       XM_039094068            1116 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus olfactory receptor family 4 subfamily
            Q member 3 (Or4q3), mRNA.
ACCESSION   XM_039094068
VERSION     XM_039094068.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 5% of CDS bases
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-24                JACYVU010000263.1  193382-193405       c
            25-87               JACYVU010000263.1  189473-189535       c
            88-132              JACYVU010000263.1  189427-189471       c
            133-1116            JACYVU010000263.1  188442-189425       c
FEATURES             Location/Qualifiers
     source          1..1116
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1116
                     /gene="Or4q3"
                     /note="olfactory receptor family 4 subfamily Q member 3;
                     The sequence of the model RefSeq transcript was modified
                     relative to its source genomic sequence to represent the
                     inferred CDS: deleted 2 bases in 2 codons; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 Proteins, and 48% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:498490"
                     /db_xref="RGD:1561412"
     CDS             1..1116
                     /gene="Or4q3"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 2 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: olfactory receptor 4Q3"
                     /protein_id="XP_038949996.1"
                     /db_xref="GeneID:498490"
                     /db_xref="RGD:1561412"
                     /translation="MCFFYNSQFNVIEFLLRRVHADEQEVLPHNFPVLSNLTHLVQLN
                     FSYIRSLDTLGLDKNKNGSGVSQFVLLGLSSSWELQLFLFSTFLLVYVVIVLGNLLIV
                     LVVQTDARLLQSPMYYFLHHLSFIDLCLSCVAVPKMLGDFLRREKVIPFSGCLAQLFF
                     LHFLGACEMFLLTVMAYDRYVAICNPLHYLRVMNSHLRLRLVFGCWCGGFIHSITQVV
                     IVIRLPFCGPNELDNFYCDVPQVVKLACMDTYLVEVLMVSNSGILSLACFLVLLLSYA
                     LILITLRTHLHRGQSKALSTCASHLTVVSLIFVPCVFIYLRPFCTFSVDKVVSVFYTV
                     ITPMLNPLIYTLRNADMKRAIGKLRKKQVASHCFGKR"
ORIGIN      
        1 atgtgtttct tctacaattc ccagtttaat gttattgaat ttctgctgcg ccgtgtacat
       61 gcagacgagc aagaggtact tcctcataat tttcccgtgt tgtctaactt aacccactta
      121 gtccaattga atttttctta cattaggtca cttgatactc ttggcttgga caaaaacaaa
      181 aatggctccg gggtgtcgca gtttgtgctt ctgggcctgt catcttcctg ggagctccag
      241 ttatttctct tctcgacatt cttgttggtg tacgtggtta ttgtcctggg aaaccttttg
      301 atagtgctgg tcgtccagac tgatgctcgc ctgctccagt cacccatgta ctattttcta
      361 caccatctgt ctttcatcga cctctgtttg agctgtgtcg ctgtgcccaa aatgctagga
      421 gatttcctac ggagggagaa ggtaatacct ttttcaggat gcctggccca gctattcttc
      481 cttcacttcc tgggagcctg tgaaatgttc ctgctgactg ttatggccta tgacaggtat
      541 gttgccatct gcaacccttt gcactacctc agagtcatga atagccacct gcgtcttcgg
      601 ttggtgtttg gctgctggtg tggaggtttc attcactcca tcacgcaggt cgtgattgtc
      661 atccggctgc ctttctgtgg ccccaatgaa ctggacaact tctactgtga tgtcccacag
      721 gtcgtcaagc tggcctgcat ggacacttac ttggttgagg tgctgatggt ctctaacagt
      781 ggcatattgt ctctcgcctg cttcttggtc ctgctcttgt cctatgcgct cattttgatc
      841 actctgagaa ctcacctcca ccggggccag agcaaagcac tgtccacctg tgcctctcac
      901 ctcacggtgg tcagcctgat cttcgtaccc tgtgtgttca tttacttgcg gcctttctgc
      961 accttctctg tggataaagt agtctctgtg ttctacacag tgatcacgcc gatgctgaac
     1021 cccctcatat atacgctcag aaatgcagac atgaagagag ctataggaaa gctgagaaag
     1081 aagcaggtag catcccactg ctttggtaaa agatga
//
