LOCUS       XM_039106584            1119 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus olfactory receptor family 4 subfamily
            F member 4A (Or4f4a), mRNA.
ACCESSION   XM_039106584
VERSION     XM_039106584.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086021) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 11% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1119
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1119
                     /gene="Or4f4a"
                     /note="olfactory receptor family 4 subfamily F member 4A;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 46 Proteins"
                     /db_xref="GeneID:296016"
                     /db_xref="RGD:1333654"
     CDS             1..1119
                     /gene="Or4f4a"
                     /codon_start=1
                     /product="olfactory receptor 4F4"
                     /protein_id="XP_038962512.1"
                     /db_xref="GeneID:296016"
                     /db_xref="RGD:1333654"
                     /translation="MNGGWGHPFLEIGDEEWDEELSEGRQGWGYKLNYISLHHKSDSF
                     YCLSKASSETVFWNESTREANRSAVKEFIFIGLSDSKELQIFLFVFFLVFYVGIVFGN
                     LLIVMTVSYDSHLHSPMYFLLANLSFADLCLSSVTAPKTIADFFYTRKVISVKGCFTQ
                     IFLLHFFGGSEMVTLVAMAFDRYVAICKPLSYTTIMCGNVCVGIVATAWGIGFLHSVS
                     QLAFAVSLPFCGPNKVDSFYCDLPKVLKLACADTYGLDIMVIANSGVLSVCSFVLLII
                     SYGIILLTIQRRPSDRSSKALSTLTAHITVVLLFFGPCIFIYAWPFPIKSLDKFLAVF
                     YSVVTPLLNPIIYTLRNTEMKTAMRRLRQWNLKFLVKS"
ORIGIN      
        1 atgaatggtg gttggggaca tcctttcttg gagataggag acgaggaatg ggatgaggaa
       61 ctttctgagg gccgacaagg atggggatac aaactgaact acataagttt gcatcacaag
      121 tctgacagtt tttattgtct ttccaaggca agttcagaga ctgtcttctg gaatgaatca
      181 acaagagaag caaatcgctc tgcagtgaaa gaatttattt ttattggact ctctgattct
      241 aaggaacttc agatttttct gtttgtattc tttttggttt tctatgtagg aattgtattt
      301 ggaaaccttc ttattgtcat gactgtgagc tatgattccc atctccactc tcctatgtac
      361 ttcctattgg ccaacctctc attcgctgat ctgtgtctgt cttctgtcac agctccaaag
      421 accattgctg attttttcta cacacgcaaa gtgatctctg tcaagggctg ctttacacag
      481 atattcctcc ttcacttttt tggaggcagt gagatggtaa cccttgtagc catggccttt
      541 gatagatacg tagcaatttg taagcctctg agctatacta caattatgtg tggaaatgtg
      601 tgtgttggca ttgtggctac tgcatgggga attggcttct tacactcagt gagccagttg
      661 gcctttgcag tgagcttacc cttttgtggt cccaataagg tcgatagttt ttattgtgac
      721 ctgcctaaag tactcaaact tgcctgtgca gacacatatg ggctagacat catggtcatt
      781 gccaacagtg gtgtgctcag tgtgtgttcc tttgttctgc taatcatctc ctatggtatc
      841 attctattga ccatccagcg ccgcccttct gataggtcat ctaaggctct gtctacactg
      901 actgctcata tcacagtagt tcttctgttt tttggaccct gcatctttat ttatgcctgg
      961 ccttttccca tcaagtcatt agataaattc cttgctgtgt tttattctgt ggtcacccct
     1021 ctcttaaacc ctattatata cacactgagg aacacagaga tgaaaactgc catgagacgc
     1081 ctgagacaat ggaatttaaa gtttttggtg aagtcttag
//
