LOCUS       NM_001000638             930 bp    mRNA    linear   ROD 26-OCT-2024
DEFINITION  Rattus norvegicus olfactory receptor family 4 subfamily A member
            66C (Or4a66c), mRNA.
ACCESSION   NM_001000638 XM_003749522
VERSION     NM_001000638.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 930)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 930)
  AUTHORS   Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M.,
            Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C.,
            Burch,P.E., Okwuonu,G., Hines,S., Lewis,L., DeRamo,C., Delgado,O.,
            Dugan-Rocha,S., Miner,G., Morgan,M., Hawes,A., Gill,R., Celera,
            Holt,R.A., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
            Barnstead,M., Chin,S., Evans,C.A., Ferriera,S., Fosler,C.,
            Glodek,A., Gu,Z., Jennings,D., Kraft,C.L., Nguyen,T.,
            Pfannkoch,C.M., Sitter,C., Sutton,G.G., Venter,J.C., Woodage,T.,
            Smith,D., Lee,H.M., Gustafson,E., Cahill,P., Kana,A.,
            Doucette-Stamm,L., Weinstock,K., Fechtel,K., Weiss,R.B., Dunn,D.M.,
            Green,E.D., Blakesley,R.W., Bouffard,G.G., De Jong,P.J.,
            Osoegawa,K., Zhu,B., Marra,M., Schein,J., Bosdet,I., Fjell,C.,
            Jones,S., Krzywinski,M., Mathewson,C., Siddiqui,A., Wye,N.,
            McPherson,J., Zhao,S., Fraser,C.M., Shetty,J., Shatsman,S.,
            Geer,K., Chen,Y., Abramzon,S., Nierman,W.C., Havlak,P.H., Chen,R.,
            Durbin,K.J., Simons,R., Ren,Y., Song,X.Z., Li,B., Liu,Y., Qin,X.,
            Cawley,S., Worley,K.C., Cooney,A.J., D'Souza,L.M., Martin,K.,
            Wu,J.Q., Gonzalez-Garay,M.L., Jackson,A.R., Kalafus,K.J.,
            McLeod,M.P., Milosavljevic,A., Virk,D., Volkov,A., Wheeler,D.A.,
            Zhang,Z., Bailey,J.A., Eichler,E.E., Tuzun,E., Birney,E.,
            Mongin,E., Ureta-Vidal,A., Woodwark,C., Zdobnov,E., Bork,P.,
            Suyama,M., Torrents,D., Alexandersson,M., Trask,B.J., Young,J.M.,
            Huang,H., Wang,H., Xing,H., Daniels,S., Gietzen,D., Schmidt,J.,
            Stevens,K., Vitt,U., Wingrove,J., Camara,F., Mar Alba,M.,
            Abril,J.F., Guigo,R., Smit,A., Dubchak,I., Rubin,E.M., Couronne,O.,
            Poliakov,A., Hubner,N., Ganten,D., Goesele,C., Hummel,O.,
            Kreitler,T., Lee,Y.A., Monti,J., Schulz,H., Zimdahl,H.,
            Himmelbauer,H., Lehrach,H., Jacob,H.J., Bromberg,S.,
            Gullings-Handley,J., Jensen-Seaman,M.I., Kwitek,A.E., Lazar,J.,
            Pasko,D., Tonellato,P.J., Twigger,S., Ponting,C.P., Duarte,J.M.,
            Rice,S., Goodstadt,L., Beatson,S.A., Emes,R.D., Winter,E.E.,
            Webber,C., Brandt,P., Nyakatura,G., Adetobi,M., Chiaromonte,F.,
            Elnitski,L., Eswara,P., Hardison,R.C., Hou,M., Kolbe,D., Makova,K.,
            Miller,W., Nekrutenko,A., Riemer,C., Schwartz,S., Taylor,J.,
            Yang,S., Zhang,Y., Lindpaintner,K., Andrews,T.D., Caccamo,M.,
            Clamp,M., Clarke,L., Curwen,V., Durbin,R., Eyras,E., Searle,S.M.,
            Cooper,G.M., Batzoglou,S., Brudno,M., Sidow,A., Stone,E.A.,
            Venter,J.C., Payseur,B.A., Bourque,G., Lopez-Otin,C., Puente,X.S.,
            Chakrabarti,K., Chatterji,S., Dewey,C., Pachter,L., Bray,N.,
            Yap,V.B., Caspi,A., Tesler,G., Pevzner,P.A., Haussler,D.,
            Roskin,K.M., Baertsch,R., Clawson,H., Furey,T.S., Hinrichs,A.S.,
            Karolchik,D., Kent,W.J., Rosenbloom,K.R., Trumbower,H.,
            Weirauch,M., Cooper,D.N., Stenson,P.D., Ma,B., Brent,M.,
            Arumugam,M., Shteynberg,D., Copley,R.R., Taylor,M.S., Riethman,H.,
            Mudunuri,U., Peterson,J., Guyer,M., Felsenfeld,A., Old,S.,
            Mockrin,S. and Collins,F.
  CONSRTM   Rat Genome Sequencing Project Consortium
  TITLE     Genome sequence of the Brown Norway rat yields insights into
            mammalian evolution
  JOURNAL   Nature 428 (6982), 493-521 (2004)
   PUBMED   15057822
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. This record has been curated by Janet Young and
            Barbara Trask (FHCRC). The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jul 10, 2014 this sequence version replaced XM_003749522.1.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-930               JAXUCZ010000003.1  94888321-94889250   c
FEATURES             Location/Qualifiers
     source          1..930
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q24"
     gene            1..930
                     /gene="Or4a66c"
                     /gene_synonym="Olr652"
                     /note="olfactory receptor family 4 subfamily A member 66C"
                     /db_xref="GeneID:404831"
                     /db_xref="RGD:1334434"
     CDS             1..930
                     /gene="Or4a66c"
                     /gene_synonym="Olr652"
                     /note="olfactory receptor gene Olr652; olfactory receptor
                     652"
                     /codon_start=1
                     /product="olfactory receptor Olr652"
                     /protein_id="NP_001000638.1"
                     /db_xref="GeneID:404831"
                     /db_xref="RGD:1334434"
                     /translation="MENHKNVTEFIFMGLWENRQIELLFFLLFLLCYLAVLMGNSVIL
                     VTISCSHLIEQPMYYFLCHLSLMDLCYTSTLIPRLIRDLAATRKNISYNECMTQLFTA
                     HLLAGVEIFILVSMALDRYVAIVKPLHYMVIMRRKRCDMLIVTAWVLGFWHSIALLLM
                     VLSLPFCGPNHINHYFCDVKPLLKLVCKDIHVVNILSIVNSGVVVVAIFIVLLASYIL
                     ILYSLRTRSSAGQRKALSTCSSHIMVVVLFFGPCIYIYILPAGNENKDKEISVFYTVI
                     APMLNPLIYTLRNSEMKSAMHKVWFQLTNSHFK"
     exon            1..930
                     /gene="Or4a66c"
                     /gene_synonym="Olr652"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggaaaatc ataaaaatgt cacagagttc atttttatgg gtctttggga gaacagacaa
       61 atagagctgc tgttctttct tttgttcctg ctttgctacc tggctgtctt aatggggaac
      121 tctgttatcc tagtcaccat aagctgcagc catttaatcg aacaaccaat gtactacttt
      181 ctctgccacc tttccctcat ggacctctgc tacacctcca ctttgattcc caggctcatc
      241 agggacttgg ccgcaactag aaaaaacatt tcctataatg agtgcatgac ccagctcttc
      301 actgcccact tgctcgcagg tgtggaaatc tttatcctgg tatccatggc cttggaccgc
      361 tatgttgcca ttgtcaagcc cctgcactac atggttatca tgcgcaggaa gagatgtgat
      421 atgttgattg tcacagcctg ggtgctgggg ttctggcact ccattgcttt actactcatg
      481 gtgctcagcc ttccattctg tggtcccaac cacatcaacc actatttctg tgatgtcaaa
      541 cctcttttga agctggtctg taaagatatt catgttgtta atattttatc aattgttaac
      601 tctggggtgg tggttgttgc catttttatt gtactacttg cttcttacat actcatattg
      661 tattctctga ggacaagatc atctgcaggg caacgcaaag cactctctac ctgcagttca
      721 cacataatgg tcgtagtttt attttttggg ccttgtattt atatttatat tttacctgca
      781 ggaaatgaga acaaggataa ggagatttct gtgttttaca ctgtgattgc ccccatgttg
      841 aatcccctca tctacacact gagaaacagt gagatgaaaa gtgccatgca caaggtttgg
      901 tttcagctga caaactcaca ttttaaataa
//
