LOCUS       NM_001001350             948 bp    mRNA    linear   ROD 24-OCT-2024
DEFINITION  Rattus norvegicus olfactory receptor family 3 subfamily A member 1E
            (Or3a1e), mRNA.
ACCESSION   NM_001001350 XM_220683
VERSION     NM_001001350.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 948)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 948)
  AUTHORS   Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M.,
            Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C.,
            Burch,P.E., Okwuonu,G., Hines,S., Lewis,L., DeRamo,C., Delgado,O.,
            Dugan-Rocha,S., Miner,G., Morgan,M., Hawes,A., Gill,R., Celera,
            Holt,R.A., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
            Barnstead,M., Chin,S., Evans,C.A., Ferriera,S., Fosler,C.,
            Glodek,A., Gu,Z., Jennings,D., Kraft,C.L., Nguyen,T.,
            Pfannkoch,C.M., Sitter,C., Sutton,G.G., Venter,J.C., Woodage,T.,
            Smith,D., Lee,H.M., Gustafson,E., Cahill,P., Kana,A.,
            Doucette-Stamm,L., Weinstock,K., Fechtel,K., Weiss,R.B., Dunn,D.M.,
            Green,E.D., Blakesley,R.W., Bouffard,G.G., De Jong,P.J.,
            Osoegawa,K., Zhu,B., Marra,M., Schein,J., Bosdet,I., Fjell,C.,
            Jones,S., Krzywinski,M., Mathewson,C., Siddiqui,A., Wye,N.,
            McPherson,J., Zhao,S., Fraser,C.M., Shetty,J., Shatsman,S.,
            Geer,K., Chen,Y., Abramzon,S., Nierman,W.C., Havlak,P.H., Chen,R.,
            Durbin,K.J., Simons,R., Ren,Y., Song,X.Z., Li,B., Liu,Y., Qin,X.,
            Cawley,S., Worley,K.C., Cooney,A.J., D'Souza,L.M., Martin,K.,
            Wu,J.Q., Gonzalez-Garay,M.L., Jackson,A.R., Kalafus,K.J.,
            McLeod,M.P., Milosavljevic,A., Virk,D., Volkov,A., Wheeler,D.A.,
            Zhang,Z., Bailey,J.A., Eichler,E.E., Tuzun,E., Birney,E.,
            Mongin,E., Ureta-Vidal,A., Woodwark,C., Zdobnov,E., Bork,P.,
            Suyama,M., Torrents,D., Alexandersson,M., Trask,B.J., Young,J.M.,
            Huang,H., Wang,H., Xing,H., Daniels,S., Gietzen,D., Schmidt,J.,
            Stevens,K., Vitt,U., Wingrove,J., Camara,F., Mar Alba,M.,
            Abril,J.F., Guigo,R., Smit,A., Dubchak,I., Rubin,E.M., Couronne,O.,
            Poliakov,A., Hubner,N., Ganten,D., Goesele,C., Hummel,O.,
            Kreitler,T., Lee,Y.A., Monti,J., Schulz,H., Zimdahl,H.,
            Himmelbauer,H., Lehrach,H., Jacob,H.J., Bromberg,S.,
            Gullings-Handley,J., Jensen-Seaman,M.I., Kwitek,A.E., Lazar,J.,
            Pasko,D., Tonellato,P.J., Twigger,S., Ponting,C.P., Duarte,J.M.,
            Rice,S., Goodstadt,L., Beatson,S.A., Emes,R.D., Winter,E.E.,
            Webber,C., Brandt,P., Nyakatura,G., Adetobi,M., Chiaromonte,F.,
            Elnitski,L., Eswara,P., Hardison,R.C., Hou,M., Kolbe,D., Makova,K.,
            Miller,W., Nekrutenko,A., Riemer,C., Schwartz,S., Taylor,J.,
            Yang,S., Zhang,Y., Lindpaintner,K., Andrews,T.D., Caccamo,M.,
            Clamp,M., Clarke,L., Curwen,V., Durbin,R., Eyras,E., Searle,S.M.,
            Cooper,G.M., Batzoglou,S., Brudno,M., Sidow,A., Stone,E.A.,
            Venter,J.C., Payseur,B.A., Bourque,G., Lopez-Otin,C., Puente,X.S.,
            Chakrabarti,K., Chatterji,S., Dewey,C., Pachter,L., Bray,N.,
            Yap,V.B., Caspi,A., Tesler,G., Pevzner,P.A., Haussler,D.,
            Roskin,K.M., Baertsch,R., Clawson,H., Furey,T.S., Hinrichs,A.S.,
            Karolchik,D., Kent,W.J., Rosenbloom,K.R., Trumbower,H.,
            Weirauch,M., Cooper,D.N., Stenson,P.D., Ma,B., Brent,M.,
            Arumugam,M., Shteynberg,D., Copley,R.R., Taylor,M.S., Riethman,H.,
            Mudunuri,U., Peterson,J., Guyer,M., Felsenfeld,A., Old,S.,
            Mockrin,S. and Collins,F.
  CONSRTM   Rat Genome Sequencing Project Consortium
  TITLE     Genome sequence of the Brown Norway rat yields insights into
            mammalian evolution
  JOURNAL   Nature 428 (6982), 493-521 (2004)
   PUBMED   15057822
COMMENT     REVIEWED REFSEQ: This record has been curated by Janet Young and
            Barbara Trask (FHCRC). The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Aug 30, 2004 this sequence version replaced XM_220683.1.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-948               JAXUCZ010000010.1  59521798-59522745
FEATURES             Location/Qualifiers
     source          1..948
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q24"
     gene            1..948
                     /gene="Or3a1e"
                     /gene_synonym="Olr1512"
                     /note="olfactory receptor family 3 subfamily A member 1E"
                     /db_xref="GeneID:287511"
                     /db_xref="RGD:1334237"
     CDS             1..948
                     /gene="Or3a1e"
                     /gene_synonym="Olr1512"
                     /note="olfactory receptor gene Olr1512; olfactory receptor
                     1512"
                     /codon_start=1
                     /product="olfactory receptor Olr1512"
                     /protein_id="NP_001001350.1"
                     /db_xref="GeneID:287511"
                     /db_xref="RGD:1334237"
                     /translation="MQPNNRANGTTVTEFILLGLVETPQLWPVVFILFLLAYMITVGG
                     NLSILAAVLVEPKLHTPMYFFLGNLSVMDVGCISVTIPSMLVRLLAHKLTVPYGDCLT
                     QLFFFHLLAGVDCFLLTAMAYDRFLAICRPLTYSTRMNHSVQRILVASSWACAFSNAL
                     THTVAISTLHFCGPNVINHFYCDLPQLFQLSCSSTQINELLLFGVGFIMAGTPMALIF
                     TSYIHVAAAVLRIRSAEGRKKAFSTCSSHLTVVTIFYGTGMFNYMRLGSTKLSDKDKA
                     IGIFNTVINPMLNPLIYSLRNPDVQAALWRVLTGRRSEA"
     exon            1..948
                     /gene="Or3a1e"
                     /gene_synonym="Olr1512"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgcagccaa ataatagagc caatgggacc actgttactg agttcattct gctgggattg
       61 gtggagacac cacagctgtg gccagttgtc ttcatactct tcctcttggc ttatatgata
      121 acagttgggg gcaacctgag catcctggca gctgtcttgg tggaacccaa actgcacacg
      181 cccatgtact tcttcctggg gaatctgtca gtgatggatg tggggtgcat cagtgtcact
      241 attccctcca tgttggttcg gctcttggcc cacaagctta cagttccata tggagactgc
      301 ctcacacagc tcttcttttt ccatctgctg gctggggttg actgcttcct attgacagcc
      361 atggcttatg accgcttcct ggccatctgc cggcccctta cctatagcac ccgaatgaac
      421 cattcagtcc agaggatttt ggtggcttca tcctgggctt gtgccttcag caatgcactg
      481 acccacactg tggccatatc cacacttcac ttctgtggcc ccaatgtgat caatcacttc
      541 tactgtgacc ttccccagct cttccagctc tcctgctcca gcacccagat caatgagctg
      601 ctgctctttg gagtgggttt cataatggcg ggaaccccca tggcactcat tttcacctcc
      661 tacatccacg tggcagctgc tgttctgcga attcgctctg ctgaaggcag gaagaaagct
      721 ttctccacat gcagctctca cctcactgtg gtgaccatat tctatggcac aggcatgttt
      781 aactacatga gacttggttc caccaaactt tctgataagg ataaagctat tgggattttc
      841 aacactgtca tcaaccctat gctgaaccca ctcatctaca gcctcaggaa ccctgatgtt
      901 caggccgccc tctggagggt actcacaggg agacggtcag aagcttga
//
