LOCUS       NM_001000010             948 bp    mRNA    linear   ROD 24-OCT-2024
DEFINITION  Rattus norvegicus olfactory receptor family 2 subfamily T member 47
            (Or2t47), mRNA.
ACCESSION   NM_001000010 XM_220466
VERSION     NM_001000010.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 948)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 948)
  AUTHORS   Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M.,
            Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C.,
            Burch,P.E., Okwuonu,G., Hines,S., Lewis,L., DeRamo,C., Delgado,O.,
            Dugan-Rocha,S., Miner,G., Morgan,M., Hawes,A., Gill,R., Celera,
            Holt,R.A., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
            Barnstead,M., Chin,S., Evans,C.A., Ferriera,S., Fosler,C.,
            Glodek,A., Gu,Z., Jennings,D., Kraft,C.L., Nguyen,T.,
            Pfannkoch,C.M., Sitter,C., Sutton,G.G., Venter,J.C., Woodage,T.,
            Smith,D., Lee,H.M., Gustafson,E., Cahill,P., Kana,A.,
            Doucette-Stamm,L., Weinstock,K., Fechtel,K., Weiss,R.B., Dunn,D.M.,
            Green,E.D., Blakesley,R.W., Bouffard,G.G., De Jong,P.J.,
            Osoegawa,K., Zhu,B., Marra,M., Schein,J., Bosdet,I., Fjell,C.,
            Jones,S., Krzywinski,M., Mathewson,C., Siddiqui,A., Wye,N.,
            McPherson,J., Zhao,S., Fraser,C.M., Shetty,J., Shatsman,S.,
            Geer,K., Chen,Y., Abramzon,S., Nierman,W.C., Havlak,P.H., Chen,R.,
            Durbin,K.J., Simons,R., Ren,Y., Song,X.Z., Li,B., Liu,Y., Qin,X.,
            Cawley,S., Worley,K.C., Cooney,A.J., D'Souza,L.M., Martin,K.,
            Wu,J.Q., Gonzalez-Garay,M.L., Jackson,A.R., Kalafus,K.J.,
            McLeod,M.P., Milosavljevic,A., Virk,D., Volkov,A., Wheeler,D.A.,
            Zhang,Z., Bailey,J.A., Eichler,E.E., Tuzun,E., Birney,E.,
            Mongin,E., Ureta-Vidal,A., Woodwark,C., Zdobnov,E., Bork,P.,
            Suyama,M., Torrents,D., Alexandersson,M., Trask,B.J., Young,J.M.,
            Huang,H., Wang,H., Xing,H., Daniels,S., Gietzen,D., Schmidt,J.,
            Stevens,K., Vitt,U., Wingrove,J., Camara,F., Mar Alba,M.,
            Abril,J.F., Guigo,R., Smit,A., Dubchak,I., Rubin,E.M., Couronne,O.,
            Poliakov,A., Hubner,N., Ganten,D., Goesele,C., Hummel,O.,
            Kreitler,T., Lee,Y.A., Monti,J., Schulz,H., Zimdahl,H.,
            Himmelbauer,H., Lehrach,H., Jacob,H.J., Bromberg,S.,
            Gullings-Handley,J., Jensen-Seaman,M.I., Kwitek,A.E., Lazar,J.,
            Pasko,D., Tonellato,P.J., Twigger,S., Ponting,C.P., Duarte,J.M.,
            Rice,S., Goodstadt,L., Beatson,S.A., Emes,R.D., Winter,E.E.,
            Webber,C., Brandt,P., Nyakatura,G., Adetobi,M., Chiaromonte,F.,
            Elnitski,L., Eswara,P., Hardison,R.C., Hou,M., Kolbe,D., Makova,K.,
            Miller,W., Nekrutenko,A., Riemer,C., Schwartz,S., Taylor,J.,
            Yang,S., Zhang,Y., Lindpaintner,K., Andrews,T.D., Caccamo,M.,
            Clamp,M., Clarke,L., Curwen,V., Durbin,R., Eyras,E., Searle,S.M.,
            Cooper,G.M., Batzoglou,S., Brudno,M., Sidow,A., Stone,E.A.,
            Venter,J.C., Payseur,B.A., Bourque,G., Lopez-Otin,C., Puente,X.S.,
            Chakrabarti,K., Chatterji,S., Dewey,C., Pachter,L., Bray,N.,
            Yap,V.B., Caspi,A., Tesler,G., Pevzner,P.A., Haussler,D.,
            Roskin,K.M., Baertsch,R., Clawson,H., Furey,T.S., Hinrichs,A.S.,
            Karolchik,D., Kent,W.J., Rosenbloom,K.R., Trumbower,H.,
            Weirauch,M., Cooper,D.N., Stenson,P.D., Ma,B., Brent,M.,
            Arumugam,M., Shteynberg,D., Copley,R.R., Taylor,M.S., Riethman,H.,
            Mudunuri,U., Peterson,J., Guyer,M., Felsenfeld,A., Old,S.,
            Mockrin,S. and Collins,F.
  CONSRTM   Rat Genome Sequencing Project Consortium
  TITLE     Genome sequence of the Brown Norway rat yields insights into
            mammalian evolution
  JOURNAL   Nature 428 (6982), 493-521 (2004)
   PUBMED   15057822
COMMENT     REVIEWED REFSEQ: This record has been curated by Janet Young and
            Barbara Trask (FHCRC). The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Aug 30, 2004 this sequence version replaced XM_220466.1.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-948               JAXUCZ010000010.1  43417962-43418909   c
FEATURES             Location/Qualifiers
     source          1..948
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q22"
     gene            1..948
                     /gene="Or2t47"
                     /gene_synonym="Olr1425"
                     /note="olfactory receptor family 2 subfamily T member 47"
                     /db_xref="GeneID:287316"
                     /db_xref="RGD:1332670"
     CDS             1..948
                     /gene="Or2t47"
                     /gene_synonym="Olr1425"
                     /note="olfactory receptor gene Olr1425; olfactory receptor
                     1425"
                     /codon_start=1
                     /product="olfactory receptor Olr1425"
                     /protein_id="NP_001000010.1"
                     /db_xref="GeneID:287316"
                     /db_xref="RGD:1332670"
                     /translation="MNNYTGQFSDFTLLGFFSQYKYPTLLAGVIFVVFLMALSGNAFL
                     ILLILFDTQLHTPMYFFISQLSLMDMMYISVTVPKMLMDQVLGNHRISAAACGMQMFL
                     YLSLGGSEFLLLAAMSYDRYVAICHPLRYPVLMNHRVCLLLLSVCWFLGSLDGFMLTP
                     VTMTFPFCGSREIHHFFCEVPAVTKLSCSDTWLYETLMYVCCVLMILIPVTVISGSYS
                     SILLTVLRMNSPEGRKKALATCSSHMTVVILFYGAAVYTYMLPTSFHTPEKDMVVSVF
                     YTILTPLLNPLIYSFRNKNVTEAMKKLLGVSTLFQEIIK"
     exon            1..948
                     /gene="Or2t47"
                     /gene_synonym="Olr1425"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgaacaact acactggaca attttcagat ttcaccctgc ttggattctt cagtcaatac
       61 aaatacccta ctctgcttgc tggggtcata tttgtggttt tcctgatggc cttgtctggg
      121 aacgccttcc tgatcctgtt gatcctcttt gacacccaac tccacacacc catgtacttt
      181 tttatcagcc agctgtccct catggacatg atgtacattt ctgtcactgt gcccaagatg
      241 ctcatggacc aggtgctggg gaaccacagg atctcagctg ctgcctgtgg gatgcagatg
      301 ttcttgtatc tgtcactggg agggtcagaa tttttgcttc tagctgccat gtcctatgac
      361 cgttatgtgg ccatctgcca tccactccgg tatcctgtcc ttatgaacca cagggtgtgt
      421 ctcctcctgt tgtctgtctg ttggttcctg ggatccttag atggcttcat gctcacccct
      481 gtcaccatga ccttcccatt ttgtggatcg cgggagatcc atcacttctt ctgtgaggtt
      541 cctgctgtga caaagctctc ctgttcagac acctggctct atgagaccct catgtatgtg
      601 tgctgtgtgc tcatgattct cattcctgtg acagtcattt caggctccta ctcatccatc
      661 ctcctcactg ttctcaggat gaactcacca gagggcagga agaaggctct tgccacctgc
      721 tcctcccaca tgacggtggt cattctcttc tatggtgctg ctgtctatac ctacatgctc
      781 cctacctcat tccacacccc tgaaaaggac atggtggtgt ctgtgtttta caccatactc
      841 acacctctgt tgaacccact aatatatagt tttaggaata agaatgtcac tgaggctatg
      901 aagaaactgc tgggtgtcag cactctcttc caggaaatca taaagtaa
//
