LOCUS       NM_001000893             939 bp    mRNA    linear   ROD 26-OCT-2024
DEFINITION  Rattus norvegicus olfactory receptor family 2 subfamily N member 1N
            (Or2n1n), mRNA.
ACCESSION   NM_001000893
VERSION     NM_001000893.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 939)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 939)
  AUTHORS   Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M.,
            Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C.,
            Burch,P.E., Okwuonu,G., Hines,S., Lewis,L., DeRamo,C., Delgado,O.,
            Dugan-Rocha,S., Miner,G., Morgan,M., Hawes,A., Gill,R., Celera,
            Holt,R.A., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
            Barnstead,M., Chin,S., Evans,C.A., Ferriera,S., Fosler,C.,
            Glodek,A., Gu,Z., Jennings,D., Kraft,C.L., Nguyen,T.,
            Pfannkoch,C.M., Sitter,C., Sutton,G.G., Venter,J.C., Woodage,T.,
            Smith,D., Lee,H.M., Gustafson,E., Cahill,P., Kana,A.,
            Doucette-Stamm,L., Weinstock,K., Fechtel,K., Weiss,R.B., Dunn,D.M.,
            Green,E.D., Blakesley,R.W., Bouffard,G.G., De Jong,P.J.,
            Osoegawa,K., Zhu,B., Marra,M., Schein,J., Bosdet,I., Fjell,C.,
            Jones,S., Krzywinski,M., Mathewson,C., Siddiqui,A., Wye,N.,
            McPherson,J., Zhao,S., Fraser,C.M., Shetty,J., Shatsman,S.,
            Geer,K., Chen,Y., Abramzon,S., Nierman,W.C., Havlak,P.H., Chen,R.,
            Durbin,K.J., Simons,R., Ren,Y., Song,X.Z., Li,B., Liu,Y., Qin,X.,
            Cawley,S., Worley,K.C., Cooney,A.J., D'Souza,L.M., Martin,K.,
            Wu,J.Q., Gonzalez-Garay,M.L., Jackson,A.R., Kalafus,K.J.,
            McLeod,M.P., Milosavljevic,A., Virk,D., Volkov,A., Wheeler,D.A.,
            Zhang,Z., Bailey,J.A., Eichler,E.E., Tuzun,E., Birney,E.,
            Mongin,E., Ureta-Vidal,A., Woodwark,C., Zdobnov,E., Bork,P.,
            Suyama,M., Torrents,D., Alexandersson,M., Trask,B.J., Young,J.M.,
            Huang,H., Wang,H., Xing,H., Daniels,S., Gietzen,D., Schmidt,J.,
            Stevens,K., Vitt,U., Wingrove,J., Camara,F., Mar Alba,M.,
            Abril,J.F., Guigo,R., Smit,A., Dubchak,I., Rubin,E.M., Couronne,O.,
            Poliakov,A., Hubner,N., Ganten,D., Goesele,C., Hummel,O.,
            Kreitler,T., Lee,Y.A., Monti,J., Schulz,H., Zimdahl,H.,
            Himmelbauer,H., Lehrach,H., Jacob,H.J., Bromberg,S.,
            Gullings-Handley,J., Jensen-Seaman,M.I., Kwitek,A.E., Lazar,J.,
            Pasko,D., Tonellato,P.J., Twigger,S., Ponting,C.P., Duarte,J.M.,
            Rice,S., Goodstadt,L., Beatson,S.A., Emes,R.D., Winter,E.E.,
            Webber,C., Brandt,P., Nyakatura,G., Adetobi,M., Chiaromonte,F.,
            Elnitski,L., Eswara,P., Hardison,R.C., Hou,M., Kolbe,D., Makova,K.,
            Miller,W., Nekrutenko,A., Riemer,C., Schwartz,S., Taylor,J.,
            Yang,S., Zhang,Y., Lindpaintner,K., Andrews,T.D., Caccamo,M.,
            Clamp,M., Clarke,L., Curwen,V., Durbin,R., Eyras,E., Searle,S.M.,
            Cooper,G.M., Batzoglou,S., Brudno,M., Sidow,A., Stone,E.A.,
            Venter,J.C., Payseur,B.A., Bourque,G., Lopez-Otin,C., Puente,X.S.,
            Chakrabarti,K., Chatterji,S., Dewey,C., Pachter,L., Bray,N.,
            Yap,V.B., Caspi,A., Tesler,G., Pevzner,P.A., Haussler,D.,
            Roskin,K.M., Baertsch,R., Clawson,H., Furey,T.S., Hinrichs,A.S.,
            Karolchik,D., Kent,W.J., Rosenbloom,K.R., Trumbower,H.,
            Weirauch,M., Cooper,D.N., Stenson,P.D., Ma,B., Brent,M.,
            Arumugam,M., Shteynberg,D., Copley,R.R., Taylor,M.S., Riethman,H.,
            Mudunuri,U., Peterson,J., Guyer,M., Felsenfeld,A., Old,S.,
            Mockrin,S. and Collins,F.
  CONSRTM   Rat Genome Sequencing Project Consortium
  TITLE     Genome sequence of the Brown Norway rat yields insights into
            mammalian evolution
  JOURNAL   Nature 428 (6982), 493-521 (2004)
   PUBMED   15057822
COMMENT     REVIEWED REFSEQ: This record has been curated by Janet Young and
            Barbara Trask (FHCRC). The reference sequence was derived from
            JAXUCZ010000020.1.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-939               JAXUCZ010000020.1  332260-333198       c
FEATURES             Location/Qualifiers
     source          1..939
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..939
                     /gene="Or2n1n"
                     /gene_synonym="Olr1678"
                     /note="olfactory receptor family 2 subfamily N member 1N"
                     /db_xref="GeneID:405194"
                     /db_xref="RGD:1332652"
     CDS             1..939
                     /gene="Or2n1n"
                     /gene_synonym="Olr1678"
                     /note="olfactory receptor gene Olr1678; olfactory receptor
                     1678"
                     /codon_start=1
                     /product="olfactory receptor Olr1678"
                     /protein_id="NP_001000893.1"
                     /db_xref="GeneID:405194"
                     /db_xref="RGD:1332652"
                     /translation="MTLINTSHPEEFILLGFADRPWLELSLFIILLVTYPTAVIGNIA
                     IILVSTIDPSLHSPMYFFLTNLSFLDICYTTSIVPQMLTNLRSSTKTISYMRCAVQLY
                     FYHTMGITECVLLALMSFDRYVAICKPLHYTLIMKQRNCFLLVSIVWLTGISYSLTEA
                     TMTLQLPLCGHNKMDHLVCEIPVLIKIACGEKETNELALSVVCIFLLAVPLCLILASY
                     ASIGHAVFKIKSSEGRKKAFGTCSSHLIVVLLFYGPAISMYLQPPSSITKDQPKFMAL
                     LYGVVTPTLNPFIYTLRNKDVKGALGNLFRNIFMSK"
     exon            1..939
                     /gene="Or2n1n"
                     /gene_synonym="Olr1678"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgacactga tcaatacaag tcacccagaa gagtttattc tacttggttt tgcagaccgt
       61 ccctggctgg aactttctct ctttattatt cttctggtaa cataccccac agccgtgatt
      121 ggaaacattg ccatcattct ggtgtccaca attgatccct ctctccacag ccccatgtat
      181 ttcttcctca ccaacctctc ctttctggac atatgctaca ccacaagcat tgtgcctcag
      241 atgctaacta accttcggag ctccacaaag accatcagct acatgaggtg tgcagttcag
      301 ctttatttct atcacacaat gggaattaca gagtgtgttc tcctggctct tatgtccttt
      361 gaccgatatg tagccatctg caaacctcta cactataccc tcataatgaa gcagcgtaac
      421 tgtttcctgt tagtgtccat tgtgtggctg actggaattt cctattctct cacagaggcc
      481 actatgactc tgcaattgcc tctatgtggc cacaacaaaa tggatcactt ggtgtgtgag
      541 attccagttc tcataaaaat tgcttgtggt gaaaaagaaa caaatgagct tgctctgtct
      601 gtggtatgca tttttctttt agctgttcct ctgtgtctaa ttcttgcttc ctatgctagt
      661 attggacatg ctgtctttaa aatcaaatct tcagagggaa ggaaaaaggc ctttgggaca
      721 tgttcctctc atctcattgt agttctcttg ttctatggcc cagccattag catgtatctt
      781 cagcctccct cctctattac gaaagaccaa cccaagttca tggctctctt gtatggagta
      841 gtaactccta cactgaaccc cttcatctat actctgagga acaaggatgt aaagggggca
      901 ttaggtaatc tattcaggaa tatttttatg tcaaagtga
//
