LOCUS       NM_001000891            1044 bp    mRNA    linear   ROD 26-OCT-2024
DEFINITION  Rattus norvegicus olfactory receptor family 2 subfamily N member 1K
            (Or2n1k), mRNA.
ACCESSION   NM_001000891
VERSION     NM_001000891.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1044)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1044)
  AUTHORS   Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M.,
            Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C.,
            Burch,P.E., Okwuonu,G., Hines,S., Lewis,L., DeRamo,C., Delgado,O.,
            Dugan-Rocha,S., Miner,G., Morgan,M., Hawes,A., Gill,R., Celera,
            Holt,R.A., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
            Barnstead,M., Chin,S., Evans,C.A., Ferriera,S., Fosler,C.,
            Glodek,A., Gu,Z., Jennings,D., Kraft,C.L., Nguyen,T.,
            Pfannkoch,C.M., Sitter,C., Sutton,G.G., Venter,J.C., Woodage,T.,
            Smith,D., Lee,H.M., Gustafson,E., Cahill,P., Kana,A.,
            Doucette-Stamm,L., Weinstock,K., Fechtel,K., Weiss,R.B., Dunn,D.M.,
            Green,E.D., Blakesley,R.W., Bouffard,G.G., De Jong,P.J.,
            Osoegawa,K., Zhu,B., Marra,M., Schein,J., Bosdet,I., Fjell,C.,
            Jones,S., Krzywinski,M., Mathewson,C., Siddiqui,A., Wye,N.,
            McPherson,J., Zhao,S., Fraser,C.M., Shetty,J., Shatsman,S.,
            Geer,K., Chen,Y., Abramzon,S., Nierman,W.C., Havlak,P.H., Chen,R.,
            Durbin,K.J., Simons,R., Ren,Y., Song,X.Z., Li,B., Liu,Y., Qin,X.,
            Cawley,S., Worley,K.C., Cooney,A.J., D'Souza,L.M., Martin,K.,
            Wu,J.Q., Gonzalez-Garay,M.L., Jackson,A.R., Kalafus,K.J.,
            McLeod,M.P., Milosavljevic,A., Virk,D., Volkov,A., Wheeler,D.A.,
            Zhang,Z., Bailey,J.A., Eichler,E.E., Tuzun,E., Birney,E.,
            Mongin,E., Ureta-Vidal,A., Woodwark,C., Zdobnov,E., Bork,P.,
            Suyama,M., Torrents,D., Alexandersson,M., Trask,B.J., Young,J.M.,
            Huang,H., Wang,H., Xing,H., Daniels,S., Gietzen,D., Schmidt,J.,
            Stevens,K., Vitt,U., Wingrove,J., Camara,F., Mar Alba,M.,
            Abril,J.F., Guigo,R., Smit,A., Dubchak,I., Rubin,E.M., Couronne,O.,
            Poliakov,A., Hubner,N., Ganten,D., Goesele,C., Hummel,O.,
            Kreitler,T., Lee,Y.A., Monti,J., Schulz,H., Zimdahl,H.,
            Himmelbauer,H., Lehrach,H., Jacob,H.J., Bromberg,S.,
            Gullings-Handley,J., Jensen-Seaman,M.I., Kwitek,A.E., Lazar,J.,
            Pasko,D., Tonellato,P.J., Twigger,S., Ponting,C.P., Duarte,J.M.,
            Rice,S., Goodstadt,L., Beatson,S.A., Emes,R.D., Winter,E.E.,
            Webber,C., Brandt,P., Nyakatura,G., Adetobi,M., Chiaromonte,F.,
            Elnitski,L., Eswara,P., Hardison,R.C., Hou,M., Kolbe,D., Makova,K.,
            Miller,W., Nekrutenko,A., Riemer,C., Schwartz,S., Taylor,J.,
            Yang,S., Zhang,Y., Lindpaintner,K., Andrews,T.D., Caccamo,M.,
            Clamp,M., Clarke,L., Curwen,V., Durbin,R., Eyras,E., Searle,S.M.,
            Cooper,G.M., Batzoglou,S., Brudno,M., Sidow,A., Stone,E.A.,
            Venter,J.C., Payseur,B.A., Bourque,G., Lopez-Otin,C., Puente,X.S.,
            Chakrabarti,K., Chatterji,S., Dewey,C., Pachter,L., Bray,N.,
            Yap,V.B., Caspi,A., Tesler,G., Pevzner,P.A., Haussler,D.,
            Roskin,K.M., Baertsch,R., Clawson,H., Furey,T.S., Hinrichs,A.S.,
            Karolchik,D., Kent,W.J., Rosenbloom,K.R., Trumbower,H.,
            Weirauch,M., Cooper,D.N., Stenson,P.D., Ma,B., Brent,M.,
            Arumugam,M., Shteynberg,D., Copley,R.R., Taylor,M.S., Riethman,H.,
            Mudunuri,U., Peterson,J., Guyer,M., Felsenfeld,A., Old,S.,
            Mockrin,S. and Collins,F.
  CONSRTM   Rat Genome Sequencing Project Consortium
  TITLE     Genome sequence of the Brown Norway rat yields insights into
            mammalian evolution
  JOURNAL   Nature 428 (6982), 493-521 (2004)
   PUBMED   15057822
COMMENT     REVIEWED REFSEQ: This record has been curated by Janet Young and
            Barbara Trask (FHCRC). The reference sequence was derived from
            JAXUCZ010000020.1.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1044              JAXUCZ010000020.1  358953-359996       c
FEATURES             Location/Qualifiers
     source          1..1044
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..1044
                     /gene="Or2n1k"
                     /gene_synonym="Olr1680"
                     /note="olfactory receptor family 2 subfamily N member 1K"
                     /db_xref="GeneID:405192"
                     /db_xref="RGD:1332697"
     CDS             1..1044
                     /gene="Or2n1k"
                     /gene_synonym="Olr1680"
                     /note="olfactory receptor gene Olr1680; olfactory receptor
                     1680"
                     /codon_start=1
                     /product="olfactory receptor Olr1680"
                     /protein_id="NP_001000891.1"
                     /db_xref="GeneID:405192"
                     /db_xref="RGD:1332697"
                     /translation="MTLINTSHPEEFILLGFADRPWLELSLFIILLVTYPTAVIGNIA
                     IILVSILDPCLHSPMYFFLTNLSFLDICYTTSLVPQMLTNLGGSTKAISYMRCAVQLY
                     FYHTMGVAECVLLALMSFDRYVAICKPLHYTLIMNQCNCLLLVSIVWLTGISFAITEA
                     TVTLQLPLCGHNKMDHLVCEIPVLIKIACGEKETNELALTVVSIFLSAVPLCLILASY
                     ASIGHAVFKIKSSEGRKKAFGTCSSHLIVVLLFYGPAISMYLQPPSSITKDQPKFMAL
                     LYGVVTPTLNPFIYTLRNKDVKRALANLFRNIFMQSEYLWMLYKVIYKLEAFSTTHSL
                     YKTHLSFYFYMFL"
     exon            1..1044
                     /gene="Or2n1k"
                     /gene_synonym="Olr1680"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgacactga tcaatacaag tcacccagaa gagtttattc tacttggttt tgcagaccgt
       61 ccctggctgg aactttctct ctttattatt cttctggtaa cataccccac agccgtgatt
      121 ggaaacattg ccatcattct ggtgtccata ttagacccct gtctccacag ccccatgtat
      181 ttcttcctca ccaacctctc ctttctggac atttgctaca ccacaagcct tgtgcctcag
      241 atgctaacta accttggagg ctccacaaag gccatcagtt acatgaggtg tgcagttcag
      301 ctttatttct accacacaat gggggttgca gagtgtgttc tcctggctct tatgtccttt
      361 gaccgatatg tagccatctg caaaccactg cactataccc tcataatgaa tcaatgtaac
      421 tgtctcctct tagtctccat tgtgtggctg actggaattt cctttgctat cacagaggcc
      481 actgtgactc tgcaattgcc tctctgtggc cacaataaaa tggatcactt ggtgtgtgag
      541 attcccgttc tcataaaaat tgcttgtggt gaaaaagaaa caaatgagct tgctctgact
      601 gtggtatcca tttttctttc agctgttcct ctgtgtttaa ttcttgcctc ctatgctagt
      661 attgggcatg ctgtctttaa aatcaaatct tcagagggaa ggaaaaaggc ctttgggaca
      721 tgttcctctc atctcattgt agttctcttg ttctatggcc cagccattag catgtatctt
      781 cagcctccct cctctattac aaaagaccaa cccaagttca tggctctctt gtatggagta
      841 gtaactccta cactgaaccc cttcatctat actctgagga ataaggatgt aaagagggca
      901 ttagctaatc tgttcaggaa tatttttatg caaagtgaat acttgtggat gttatataaa
      961 gtaatataca aattagaggc tttttctaca actcattccc tgtacaaaac tcatctttct
     1021 ttttattttt acatgttctt ataa
//
