LOCUS       NM_001000044             942 bp    mRNA    linear   ROD 26-OCT-2024
DEFINITION  Rattus norvegicus olfactory receptor family 1 subfamily O member 4
            (Or2aj4), mRNA.
ACCESSION   NM_001000044 XM_221287
VERSION     NM_001000044.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 942)
  AUTHORS   Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M.,
            Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C.,
            Burch,P.E., Okwuonu,G., Hines,S., Lewis,L., DeRamo,C., Delgado,O.,
            Dugan-Rocha,S., Miner,G., Morgan,M., Hawes,A., Gill,R., Celera,
            Holt,R.A., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
            Barnstead,M., Chin,S., Evans,C.A., Ferriera,S., Fosler,C.,
            Glodek,A., Gu,Z., Jennings,D., Kraft,C.L., Nguyen,T.,
            Pfannkoch,C.M., Sitter,C., Sutton,G.G., Venter,J.C., Woodage,T.,
            Smith,D., Lee,H.M., Gustafson,E., Cahill,P., Kana,A.,
            Doucette-Stamm,L., Weinstock,K., Fechtel,K., Weiss,R.B., Dunn,D.M.,
            Green,E.D., Blakesley,R.W., Bouffard,G.G., De Jong,P.J.,
            Osoegawa,K., Zhu,B., Marra,M., Schein,J., Bosdet,I., Fjell,C.,
            Jones,S., Krzywinski,M., Mathewson,C., Siddiqui,A., Wye,N.,
            McPherson,J., Zhao,S., Fraser,C.M., Shetty,J., Shatsman,S.,
            Geer,K., Chen,Y., Abramzon,S., Nierman,W.C., Havlak,P.H., Chen,R.,
            Durbin,K.J., Simons,R., Ren,Y., Song,X.Z., Li,B., Liu,Y., Qin,X.,
            Cawley,S., Worley,K.C., Cooney,A.J., D'Souza,L.M., Martin,K.,
            Wu,J.Q., Gonzalez-Garay,M.L., Jackson,A.R., Kalafus,K.J.,
            McLeod,M.P., Milosavljevic,A., Virk,D., Volkov,A., Wheeler,D.A.,
            Zhang,Z., Bailey,J.A., Eichler,E.E., Tuzun,E., Birney,E.,
            Mongin,E., Ureta-Vidal,A., Woodwark,C., Zdobnov,E., Bork,P.,
            Suyama,M., Torrents,D., Alexandersson,M., Trask,B.J., Young,J.M.,
            Huang,H., Wang,H., Xing,H., Daniels,S., Gietzen,D., Schmidt,J.,
            Stevens,K., Vitt,U., Wingrove,J., Camara,F., Mar Alba,M.,
            Abril,J.F., Guigo,R., Smit,A., Dubchak,I., Rubin,E.M., Couronne,O.,
            Poliakov,A., Hubner,N., Ganten,D., Goesele,C., Hummel,O.,
            Kreitler,T., Lee,Y.A., Monti,J., Schulz,H., Zimdahl,H.,
            Himmelbauer,H., Lehrach,H., Jacob,H.J., Bromberg,S.,
            Gullings-Handley,J., Jensen-Seaman,M.I., Kwitek,A.E., Lazar,J.,
            Pasko,D., Tonellato,P.J., Twigger,S., Ponting,C.P., Duarte,J.M.,
            Rice,S., Goodstadt,L., Beatson,S.A., Emes,R.D., Winter,E.E.,
            Webber,C., Brandt,P., Nyakatura,G., Adetobi,M., Chiaromonte,F.,
            Elnitski,L., Eswara,P., Hardison,R.C., Hou,M., Kolbe,D., Makova,K.,
            Miller,W., Nekrutenko,A., Riemer,C., Schwartz,S., Taylor,J.,
            Yang,S., Zhang,Y., Lindpaintner,K., Andrews,T.D., Caccamo,M.,
            Clamp,M., Clarke,L., Curwen,V., Durbin,R., Eyras,E., Searle,S.M.,
            Cooper,G.M., Batzoglou,S., Brudno,M., Sidow,A., Stone,E.A.,
            Venter,J.C., Payseur,B.A., Bourque,G., Lopez-Otin,C., Puente,X.S.,
            Chakrabarti,K., Chatterji,S., Dewey,C., Pachter,L., Bray,N.,
            Yap,V.B., Caspi,A., Tesler,G., Pevzner,P.A., Haussler,D.,
            Roskin,K.M., Baertsch,R., Clawson,H., Furey,T.S., Hinrichs,A.S.,
            Karolchik,D., Kent,W.J., Rosenbloom,K.R., Trumbower,H.,
            Weirauch,M., Cooper,D.N., Stenson,P.D., Ma,B., Brent,M.,
            Arumugam,M., Shteynberg,D., Copley,R.R., Taylor,M.S., Riethman,H.,
            Mudunuri,U., Peterson,J., Guyer,M., Felsenfeld,A., Old,S.,
            Mockrin,S. and Collins,F.
  CONSRTM   Rat Genome Sequencing Project Consortium
  TITLE     Genome sequence of the Brown Norway rat yields insights into
            mammalian evolution
  JOURNAL   Nature 428 (6982), 493-521 (2004)
   PUBMED   15057822
COMMENT     REVIEWED REFSEQ: This record has been curated by Janet Young and
            Barbara Trask (FHCRC). The reference sequence was derived from
            JAXUCZ010000011.1.
            
            On Aug 30, 2004 this sequence version replaced XM_221287.2.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-541               JAXUCZ010000011.1  94782974-94783514
            542-942             JAXUCZ010000011.1  94783515-94783915
FEATURES             Location/Qualifiers
     source          1..942
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q23"
     gene            1..942
                     /gene="Or2aj4"
                     /gene_synonym="Olr1566; ratchr11-83598152-83599093_ORF"
                     /note="olfactory receptor family 1 subfamily O member 4"
                     /db_xref="GeneID:287973"
                     /db_xref="RGD:1333622"
     CDS             1..942
                     /gene="Or2aj4"
                     /gene_synonym="Olr1566; ratchr11-83598152-83599093_ORF"
                     /note="olfactory receptor gene Olr1566; olfactory receptor
                     1566"
                     /codon_start=1
                     /product="olfactory receptor Olr1566"
                     /protein_id="NP_001000044.1"
                     /db_xref="GeneID:287973"
                     /db_xref="RGD:1333622"
                     /translation="MGPGNYTFSSDFILLGLFSSSKTSLVFFSFIFFIFIMTITENTL
                     MILLIHRDSRLHTPMYFLLSHLSFMDILHISNIVPKMIADFLSGSRTISFAGCGFQIF
                     LSLTLLGGECLLLAAMSYDRYVAICHPLRYPVLMRDNSSGLLAAGSWLVGILNSIVHT
                     AFALHFPFCRSRAIDHFFCEVPAMLKLSCIDTTHYERGVYVSGIIFLLIPFSMISISY
                     VQILLTVFQMQSSGARQKSFSTCSFHMVVVIMYYGPFIFTYMRPRSYHTPGQDKFLAI
                     FYTILTPTLNPIIYSFRNKDVLMAVKNIVQSNFLNKN"
     exon            1..942
                     /gene="Or2aj4"
                     /gene_synonym="Olr1566; ratchr11-83598152-83599093_ORF"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgggacctg ggaactacac tttcagcagc gactttatcc tcttgggact gttctcttct
       61 tccaagacaa gcttagtttt tttctcattt atatttttca tttttattat gacaataaca
      121 gaaaacaccc tcatgatcct cctaatccac agggattctc gactccatac cccaatgtat
      181 ttcctgctca gtcacctctc tttcatggac atcttgcaca tttccaacat tgttcctaaa
      241 atgattgccg actttctctc aggcagcaga accatttcct ttgcaggctg tggcttccag
      301 atattcctgt ccctcacctt gctaggtggt gagtgccttc tcctggcagc catgtcctat
      361 gatcgatatg tggctatctg ccacccactt cgctatcctg tgctgatgag agataactcc
      421 agtgggctcc tggctgcagg ctcctggcta gtggggatcc tcaactccat agtgcacaca
      481 gcttttgcac tccattttcc cttctgccgc tcccgggcta ttgatcactt tttctgcgaa
      541 gtccctgcca tgttgaagtt gtcatgtata gacacaacac actatgagag aggagtttat
      601 gtgagtggca ttatttttct gctaatccca ttttccatga tctctatatc gtatgtgcaa
      661 attctcctca ctgtcttcca aatgcagtca tcgggggctc ggcaaaagtc cttttctacc
      721 tgttcctttc acatggttgt tgtcataatg tactatgggc cattcatctt cacatatatg
      781 agacctcgct cataccacac tccagggcag gataagtttc tggcgatatt ctataccatc
      841 ctgacaccta cactcaaccc cataatctac agctttcgga ataaagatgt cctcatggct
      901 gtgaaaaaca tagtccaaag caatttcctg aataaaaatt ga
//
