LOCUS       NM_001000784             942 bp    mRNA    linear   ROD 24-OCT-2024
DEFINITION  Rattus norvegicus olfactory receptor family 1 subfamily O member 2C
            (Or1x2c), mRNA.
ACCESSION   NM_001000784 XM_003750825
VERSION     NM_001000784.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 942)
  AUTHORS   Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M.,
            Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C.,
            Burch,P.E., Okwuonu,G., Hines,S., Lewis,L., DeRamo,C., Delgado,O.,
            Dugan-Rocha,S., Miner,G., Morgan,M., Hawes,A., Gill,R., Celera,
            Holt,R.A., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
            Barnstead,M., Chin,S., Evans,C.A., Ferriera,S., Fosler,C.,
            Glodek,A., Gu,Z., Jennings,D., Kraft,C.L., Nguyen,T.,
            Pfannkoch,C.M., Sitter,C., Sutton,G.G., Venter,J.C., Woodage,T.,
            Smith,D., Lee,H.M., Gustafson,E., Cahill,P., Kana,A.,
            Doucette-Stamm,L., Weinstock,K., Fechtel,K., Weiss,R.B., Dunn,D.M.,
            Green,E.D., Blakesley,R.W., Bouffard,G.G., De Jong,P.J.,
            Osoegawa,K., Zhu,B., Marra,M., Schein,J., Bosdet,I., Fjell,C.,
            Jones,S., Krzywinski,M., Mathewson,C., Siddiqui,A., Wye,N.,
            McPherson,J., Zhao,S., Fraser,C.M., Shetty,J., Shatsman,S.,
            Geer,K., Chen,Y., Abramzon,S., Nierman,W.C., Havlak,P.H., Chen,R.,
            Durbin,K.J., Simons,R., Ren,Y., Song,X.Z., Li,B., Liu,Y., Qin,X.,
            Cawley,S., Worley,K.C., Cooney,A.J., D'Souza,L.M., Martin,K.,
            Wu,J.Q., Gonzalez-Garay,M.L., Jackson,A.R., Kalafus,K.J.,
            McLeod,M.P., Milosavljevic,A., Virk,D., Volkov,A., Wheeler,D.A.,
            Zhang,Z., Bailey,J.A., Eichler,E.E., Tuzun,E., Birney,E.,
            Mongin,E., Ureta-Vidal,A., Woodwark,C., Zdobnov,E., Bork,P.,
            Suyama,M., Torrents,D., Alexandersson,M., Trask,B.J., Young,J.M.,
            Huang,H., Wang,H., Xing,H., Daniels,S., Gietzen,D., Schmidt,J.,
            Stevens,K., Vitt,U., Wingrove,J., Camara,F., Mar Alba,M.,
            Abril,J.F., Guigo,R., Smit,A., Dubchak,I., Rubin,E.M., Couronne,O.,
            Poliakov,A., Hubner,N., Ganten,D., Goesele,C., Hummel,O.,
            Kreitler,T., Lee,Y.A., Monti,J., Schulz,H., Zimdahl,H.,
            Himmelbauer,H., Lehrach,H., Jacob,H.J., Bromberg,S.,
            Gullings-Handley,J., Jensen-Seaman,M.I., Kwitek,A.E., Lazar,J.,
            Pasko,D., Tonellato,P.J., Twigger,S., Ponting,C.P., Duarte,J.M.,
            Rice,S., Goodstadt,L., Beatson,S.A., Emes,R.D., Winter,E.E.,
            Webber,C., Brandt,P., Nyakatura,G., Adetobi,M., Chiaromonte,F.,
            Elnitski,L., Eswara,P., Hardison,R.C., Hou,M., Kolbe,D., Makova,K.,
            Miller,W., Nekrutenko,A., Riemer,C., Schwartz,S., Taylor,J.,
            Yang,S., Zhang,Y., Lindpaintner,K., Andrews,T.D., Caccamo,M.,
            Clamp,M., Clarke,L., Curwen,V., Durbin,R., Eyras,E., Searle,S.M.,
            Cooper,G.M., Batzoglou,S., Brudno,M., Sidow,A., Stone,E.A.,
            Venter,J.C., Payseur,B.A., Bourque,G., Lopez-Otin,C., Puente,X.S.,
            Chakrabarti,K., Chatterji,S., Dewey,C., Pachter,L., Bray,N.,
            Yap,V.B., Caspi,A., Tesler,G., Pevzner,P.A., Haussler,D.,
            Roskin,K.M., Baertsch,R., Clawson,H., Furey,T.S., Hinrichs,A.S.,
            Karolchik,D., Kent,W.J., Rosenbloom,K.R., Trumbower,H.,
            Weirauch,M., Cooper,D.N., Stenson,P.D., Ma,B., Brent,M.,
            Arumugam,M., Shteynberg,D., Copley,R.R., Taylor,M.S., Riethman,H.,
            Mudunuri,U., Peterson,J., Guyer,M., Felsenfeld,A., Old,S.,
            Mockrin,S. and Collins,F.
  CONSRTM   Rat Genome Sequencing Project Consortium
  TITLE     Genome sequence of the Brown Norway rat yields insights into
            mammalian evolution
  JOURNAL   Nature 428 (6982), 493-521 (2004)
   PUBMED   15057822
COMMENT     REVIEWED REFSEQ: This record has been curated by Janet Young and
            Barbara Trask (FHCRC). The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Jul 10, 2014 this sequence version replaced XM_003750825.1.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-942               JAXUCZ010000010.1  35865669-35866610
FEATURES             Location/Qualifiers
     source          1..942
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q22"
     gene            1..942
                     /gene="Or1x2c"
                     /gene_synonym="Olr1410"
                     /note="olfactory receptor family 1 subfamily O member 2C"
                     /db_xref="GeneID:405062"
                     /db_xref="RGD:1334078"
     CDS             1..942
                     /gene="Or1x2c"
                     /gene_synonym="Olr1410"
                     /note="olfactory receptor gene Olr1410; olfactory receptor
                     1410"
                     /codon_start=1
                     /product="olfactory receptor Olr1410"
                     /protein_id="NP_001000784.1"
                     /db_xref="GeneID:405062"
                     /db_xref="RGD:1334078"
                     /translation="MSKWGENETGVSEFLLLGITNDPQQQRILFWAFLCMYLVTVAGN
                     TLIFMAISSDPRLHTPMYFFLANLSFNEVCFTTNLIPRLLASHVSGIGTISYAHCLTQ
                     MYFLISFADVDFCLLTAMALDRFVAICYPLQYHTIITPRLCVGLAAVVWISCGLIALV
                     HTLFMSRLTFCSSIPEISHFYCDPYLLMKLACSDTRVDQLLFLGAVVLFVAPCILIVF
                     SYARIAVAVFQIPSAKGRHKAFSTCSSHLTVVILFYGTVLGIYIRPPDSFSTQDTVAT
                     IMYTVVTPMLNPFIYSLRNKDMKETVTRLLHRCSKSS"
     exon            1..942
                     /gene="Or1x2c"
                     /gene_synonym="Olr1410"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgtccaagt ggggagagaa tgagactgga gtcagtgaat ttctcctgct cggtatcacc
       61 aatgacccac aacagcaacg aatcctcttc tgggctttct tgtgcatgta cctagtcacg
      121 gtggctggga acacactcat cttcatggcc atcagctctg accctcgctt acacaccccc
      181 atgtacttct tccttgccaa cctttctttc aatgaagtct gcttcaccac caatctcatc
      241 cccaggctct tggctagcca cgtgtctgga ataggaacca tctcttatgc ccactgcctc
      301 actcagatgt actttctaat ttcctttgcc gatgtggact tctgtctgct aactgccatg
      361 gcactggaca gatttgtggc catctgctac ccactacaat atcacacaat cataacaccc
      421 cggctctgtg tggggctggc agctgttgtg tggataagct gtgggctcat agctctagtg
      481 cacacactct tcatgagcag actgaccttc tgctcctcga ttccagagat ctctcacttc
      541 tactgtgatc cttacctgct catgaagttg gcctgttcag acactcgagt tgatcaactt
      601 ctcttcctgg gagccgtggt cctttttgtg gccccctgca ttctcattgt gttctcttat
      661 gctcgaattg ctgtcgcagt ctttcagata ccttctgcca agggcaggca caaggcattt
      721 tccacgtgta gctcccactt aactgtggtc attttgttct atgggacagt tctggggatc
      781 tacatacgac ctccagactc cttctccacc caggatacag tagccaccat catgtatact
      841 gtggttactc ccatgctgaa ccccttcatt tacagcctga ggaacaagga catgaaggag
      901 acggtgacaa ggctcctcca tagatgttca aagtcctcat ag
//
