LOCUS       NM_001001117             930 bp    mRNA    linear   ROD 26-OCT-2024
DEFINITION  Rattus norvegicus olfactory receptor family 1 subfamily O member 2C
            (Or1o2c), mRNA.
ACCESSION   NM_001001117
VERSION     NM_001001117.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 930)
  AUTHORS   Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M.,
            Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C.,
            Burch,P.E., Okwuonu,G., Hines,S., Lewis,L., DeRamo,C., Delgado,O.,
            Dugan-Rocha,S., Miner,G., Morgan,M., Hawes,A., Gill,R., Celera,
            Holt,R.A., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
            Barnstead,M., Chin,S., Evans,C.A., Ferriera,S., Fosler,C.,
            Glodek,A., Gu,Z., Jennings,D., Kraft,C.L., Nguyen,T.,
            Pfannkoch,C.M., Sitter,C., Sutton,G.G., Venter,J.C., Woodage,T.,
            Smith,D., Lee,H.M., Gustafson,E., Cahill,P., Kana,A.,
            Doucette-Stamm,L., Weinstock,K., Fechtel,K., Weiss,R.B., Dunn,D.M.,
            Green,E.D., Blakesley,R.W., Bouffard,G.G., De Jong,P.J.,
            Osoegawa,K., Zhu,B., Marra,M., Schein,J., Bosdet,I., Fjell,C.,
            Jones,S., Krzywinski,M., Mathewson,C., Siddiqui,A., Wye,N.,
            McPherson,J., Zhao,S., Fraser,C.M., Shetty,J., Shatsman,S.,
            Geer,K., Chen,Y., Abramzon,S., Nierman,W.C., Havlak,P.H., Chen,R.,
            Durbin,K.J., Simons,R., Ren,Y., Song,X.Z., Li,B., Liu,Y., Qin,X.,
            Cawley,S., Worley,K.C., Cooney,A.J., D'Souza,L.M., Martin,K.,
            Wu,J.Q., Gonzalez-Garay,M.L., Jackson,A.R., Kalafus,K.J.,
            McLeod,M.P., Milosavljevic,A., Virk,D., Volkov,A., Wheeler,D.A.,
            Zhang,Z., Bailey,J.A., Eichler,E.E., Tuzun,E., Birney,E.,
            Mongin,E., Ureta-Vidal,A., Woodwark,C., Zdobnov,E., Bork,P.,
            Suyama,M., Torrents,D., Alexandersson,M., Trask,B.J., Young,J.M.,
            Huang,H., Wang,H., Xing,H., Daniels,S., Gietzen,D., Schmidt,J.,
            Stevens,K., Vitt,U., Wingrove,J., Camara,F., Mar Alba,M.,
            Abril,J.F., Guigo,R., Smit,A., Dubchak,I., Rubin,E.M., Couronne,O.,
            Poliakov,A., Hubner,N., Ganten,D., Goesele,C., Hummel,O.,
            Kreitler,T., Lee,Y.A., Monti,J., Schulz,H., Zimdahl,H.,
            Himmelbauer,H., Lehrach,H., Jacob,H.J., Bromberg,S.,
            Gullings-Handley,J., Jensen-Seaman,M.I., Kwitek,A.E., Lazar,J.,
            Pasko,D., Tonellato,P.J., Twigger,S., Ponting,C.P., Duarte,J.M.,
            Rice,S., Goodstadt,L., Beatson,S.A., Emes,R.D., Winter,E.E.,
            Webber,C., Brandt,P., Nyakatura,G., Adetobi,M., Chiaromonte,F.,
            Elnitski,L., Eswara,P., Hardison,R.C., Hou,M., Kolbe,D., Makova,K.,
            Miller,W., Nekrutenko,A., Riemer,C., Schwartz,S., Taylor,J.,
            Yang,S., Zhang,Y., Lindpaintner,K., Andrews,T.D., Caccamo,M.,
            Clamp,M., Clarke,L., Curwen,V., Durbin,R., Eyras,E., Searle,S.M.,
            Cooper,G.M., Batzoglou,S., Brudno,M., Sidow,A., Stone,E.A.,
            Venter,J.C., Payseur,B.A., Bourque,G., Lopez-Otin,C., Puente,X.S.,
            Chakrabarti,K., Chatterji,S., Dewey,C., Pachter,L., Bray,N.,
            Yap,V.B., Caspi,A., Tesler,G., Pevzner,P.A., Haussler,D.,
            Roskin,K.M., Baertsch,R., Clawson,H., Furey,T.S., Hinrichs,A.S.,
            Karolchik,D., Kent,W.J., Rosenbloom,K.R., Trumbower,H.,
            Weirauch,M., Cooper,D.N., Stenson,P.D., Ma,B., Brent,M.,
            Arumugam,M., Shteynberg,D., Copley,R.R., Taylor,M.S., Riethman,H.,
            Mudunuri,U., Peterson,J., Guyer,M., Felsenfeld,A., Old,S.,
            Mockrin,S. and Collins,F.
  CONSRTM   Rat Genome Sequencing Project Consortium
  TITLE     Genome sequence of the Brown Norway rat yields insights into
            mammalian evolution
  JOURNAL   Nature 428 (6982), 493-521 (2004)
   PUBMED   15057822
COMMENT     REVIEWED REFSEQ: This record has been curated by Janet Young and
            Barbara Trask (FHCRC). The reference sequence was derived from
            JAXUCZ010000020.1.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript is intronless :: SRR26360190.1753321.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-930               JAXUCZ010000020.1  1078730-1079659     c
FEATURES             Location/Qualifiers
     source          1..930
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..930
                     /gene="Or1o2c"
                     /gene_synonym="Olr1722"
                     /note="olfactory receptor family 1 subfamily O member 2C"
                     /db_xref="GeneID:406016"
                     /db_xref="RGD:1334000"
     CDS             1..930
                     /gene="Or1o2c"
                     /gene_synonym="Olr1722"
                     /note="olfactory receptor gene Olr1722; olfactory receptor
                     1722"
                     /codon_start=1
                     /product="olfactory receptor Olr1722"
                     /protein_id="NP_001001117.1"
                     /db_xref="GeneID:406016"
                     /db_xref="RGD:1334000"
                     /translation="MNCSQAPDFILLGLSSDPEKWQLFFSIFLAFYLLGLSGNLLLLL
                     AIGADIHLHTPMYFFLSQLSLVDLCFITTTAPKILQTLWTGDGSISFSGCLTQFYFFA
                     LFADMDNLLLAVMAIDRYAAICHPLLYPLLMTPCRCELLACGSWGLAHCVSLIYALLL
                     SQLYFHTNEGIPHFFCDFGPLLLLSCSDTHLTESLMMGLSAVLGISALFCIVSSYASI
                     FHAVFRVPSAQGKRKALATCSSHLSVVLLFYSTVFATYLKPPSTSHSSGEVVAAVLYT
                     LVTPTLNPFIYSLRNRDVKSSLRKILNIEKSWD"
     exon            1..930
                     /gene="Or1o2c"
                     /gene_synonym="Olr1722"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgaattgca gtcaagctcc tgactttatc ctcttgggac tgtccagtga cccagagaaa
       61 tggcagctct tctttagcat cttccttgct ttctacttgc tgggcctttc agggaacctg
      121 ctccttctgt tagctattgg tgctgatatc cacctccaca cccccatgta tttcttcctc
      181 agtcagctct cacttgtgga tctttgcttc atcaccacca cagctcccaa aattctgcag
      241 actctgtgga ctggagatgg atcaatctca ttctctggat gcctgactca gttttacttc
      301 tttgctcttt ttgctgacat ggataacctg cttctggcag tcatggctat tgaccgctat
      361 gctgctatct gccacccact gctctaccca cttctcatga ctccttgtag atgtgaactt
      421 cttgcttgtg ggtcatgggg attagctcat tgtgtgtctt tgatctatgc cttattactt
      481 tctcagttat attttcacac caatgaaggg atacctcatt ttttctgtga ttttgggcct
      541 ctcttattgc tttcctgctc agacactcat ctcacagaga gcctgatgat gggtttgtct
      601 gcagttttgg gaatcagtgc acttttctgc attgtaagtt cttatgcttc tatttttcat
      661 gccgtgttta gggttccttc agcacagggg aaaaggaaag ccttggctac atgcagttcc
      721 cacctctctg tagttctcct tttctacagc acagtctttg ccacctactt gaagccccca
      781 tctacttctc actcctctgg ggaggtggta gctgctgttt tgtatacctt ggtaactccc
      841 actctgaacc ccttcattta cagtctgaga aatagggatg ttaagagttc cttgagaaag
      901 atcctgaaca tagagaagtc ttgggactaa
//
