LOCUS       NM_001000277             930 bp    mRNA    linear   ROD 24-OCT-2024
DEFINITION  Rattus norvegicus olfactory receptor family 1 subfamily O member
            11C (Or1o11c), mRNA.
ACCESSION   NM_001000277 XM_227929
VERSION     NM_001000277.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 930)
  AUTHORS   Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M.,
            Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C.,
            Burch,P.E., Okwuonu,G., Hines,S., Lewis,L., DeRamo,C., Delgado,O.,
            Dugan-Rocha,S., Miner,G., Morgan,M., Hawes,A., Gill,R., Celera,
            Holt,R.A., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
            Barnstead,M., Chin,S., Evans,C.A., Ferriera,S., Fosler,C.,
            Glodek,A., Gu,Z., Jennings,D., Kraft,C.L., Nguyen,T.,
            Pfannkoch,C.M., Sitter,C., Sutton,G.G., Venter,J.C., Woodage,T.,
            Smith,D., Lee,H.M., Gustafson,E., Cahill,P., Kana,A.,
            Doucette-Stamm,L., Weinstock,K., Fechtel,K., Weiss,R.B., Dunn,D.M.,
            Green,E.D., Blakesley,R.W., Bouffard,G.G., De Jong,P.J.,
            Osoegawa,K., Zhu,B., Marra,M., Schein,J., Bosdet,I., Fjell,C.,
            Jones,S., Krzywinski,M., Mathewson,C., Siddiqui,A., Wye,N.,
            McPherson,J., Zhao,S., Fraser,C.M., Shetty,J., Shatsman,S.,
            Geer,K., Chen,Y., Abramzon,S., Nierman,W.C., Havlak,P.H., Chen,R.,
            Durbin,K.J., Simons,R., Ren,Y., Song,X.Z., Li,B., Liu,Y., Qin,X.,
            Cawley,S., Worley,K.C., Cooney,A.J., D'Souza,L.M., Martin,K.,
            Wu,J.Q., Gonzalez-Garay,M.L., Jackson,A.R., Kalafus,K.J.,
            McLeod,M.P., Milosavljevic,A., Virk,D., Volkov,A., Wheeler,D.A.,
            Zhang,Z., Bailey,J.A., Eichler,E.E., Tuzun,E., Birney,E.,
            Mongin,E., Ureta-Vidal,A., Woodwark,C., Zdobnov,E., Bork,P.,
            Suyama,M., Torrents,D., Alexandersson,M., Trask,B.J., Young,J.M.,
            Huang,H., Wang,H., Xing,H., Daniels,S., Gietzen,D., Schmidt,J.,
            Stevens,K., Vitt,U., Wingrove,J., Camara,F., Mar Alba,M.,
            Abril,J.F., Guigo,R., Smit,A., Dubchak,I., Rubin,E.M., Couronne,O.,
            Poliakov,A., Hubner,N., Ganten,D., Goesele,C., Hummel,O.,
            Kreitler,T., Lee,Y.A., Monti,J., Schulz,H., Zimdahl,H.,
            Himmelbauer,H., Lehrach,H., Jacob,H.J., Bromberg,S.,
            Gullings-Handley,J., Jensen-Seaman,M.I., Kwitek,A.E., Lazar,J.,
            Pasko,D., Tonellato,P.J., Twigger,S., Ponting,C.P., Duarte,J.M.,
            Rice,S., Goodstadt,L., Beatson,S.A., Emes,R.D., Winter,E.E.,
            Webber,C., Brandt,P., Nyakatura,G., Adetobi,M., Chiaromonte,F.,
            Elnitski,L., Eswara,P., Hardison,R.C., Hou,M., Kolbe,D., Makova,K.,
            Miller,W., Nekrutenko,A., Riemer,C., Schwartz,S., Taylor,J.,
            Yang,S., Zhang,Y., Lindpaintner,K., Andrews,T.D., Caccamo,M.,
            Clamp,M., Clarke,L., Curwen,V., Durbin,R., Eyras,E., Searle,S.M.,
            Cooper,G.M., Batzoglou,S., Brudno,M., Sidow,A., Stone,E.A.,
            Venter,J.C., Payseur,B.A., Bourque,G., Lopez-Otin,C., Puente,X.S.,
            Chakrabarti,K., Chatterji,S., Dewey,C., Pachter,L., Bray,N.,
            Yap,V.B., Caspi,A., Tesler,G., Pevzner,P.A., Haussler,D.,
            Roskin,K.M., Baertsch,R., Clawson,H., Furey,T.S., Hinrichs,A.S.,
            Karolchik,D., Kent,W.J., Rosenbloom,K.R., Trumbower,H.,
            Weirauch,M., Cooper,D.N., Stenson,P.D., Ma,B., Brent,M.,
            Arumugam,M., Shteynberg,D., Copley,R.R., Taylor,M.S., Riethman,H.,
            Mudunuri,U., Peterson,J., Guyer,M., Felsenfeld,A., Old,S.,
            Mockrin,S. and Collins,F.
  CONSRTM   Rat Genome Sequencing Project Consortium
  TITLE     Genome sequence of the Brown Norway rat yields insights into
            mammalian evolution
  JOURNAL   Nature 428 (6982), 493-521 (2004)
   PUBMED   15057822
COMMENT     REVIEWED REFSEQ: This record has been curated by Janet Young and
            Barbara Trask (FHCRC). The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On Aug 30, 2004 this sequence version replaced XM_227929.1.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-930               JAXUCZ010000020.1  1102429-1103358     c
FEATURES             Location/Qualifiers
     source          1..930
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..930
                     /gene="Or1o11c"
                     /gene_synonym="Olr1724"
                     /note="olfactory receptor family 1 subfamily O member 11C"
                     /db_xref="GeneID:294183"
                     /db_xref="RGD:1334019"
     CDS             1..930
                     /gene="Or1o11c"
                     /gene_synonym="Olr1724"
                     /note="olfactory receptor gene Olr1724; olfactory receptor
                     1724"
                     /codon_start=1
                     /product="olfactory receptor Olr1724"
                     /protein_id="NP_001000277.1"
                     /db_xref="GeneID:294183"
                     /db_xref="RGD:1334019"
                     /translation="MNCTQAPGFILLGLSRDPEKWQLFFSIFLALYLLGLLGNLLLLL
                     AIGADIHLHTPMYFFLSQLSLVDLCFITTTAPKMLQALWTGDGSISFSGCLTQFYFFA
                     VFADMDNLLLAVMAIDRYAAICHPLLYPLLMTPCRCEVLASGSWGVAHCVSLFYTLLL
                     SQLYFQTNEGIPHFFCDSRPLLLLSCSDNHLNEGLMMGLSAVMGISALFCILSSYASI
                     FHAVARVPSAQGKRKALATCSSHFSVVLLFHSTVFATYLKPPSTSHSSGEVVAAVLYT
                     LVTPTLNPFIYSLRNRDVKSSLRRILNIEKSQD"
     exon            1..930
                     /gene="Or1o11c"
                     /gene_synonym="Olr1724"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgaactgca ctcaggctcc tggctttatc ctcttgggac tatccaggga cccagagaaa
       61 tggcagctct tctttagcat cttccttgct ctctacttgc tgggcctttt agggaacctg
      121 ctccttctgt tagctattgg tgctgatatc cacctccaca cccccatgta tttcttcctc
      181 agtcagctct cacttgtgga tctttgcttc atcaccacca cagcccccaa aatgctgcag
      241 gctctgtgga ctggagatgg atccatttca ttctctggat gcctgactca gttttacttc
      301 tttgctgttt ttgctgacat ggataacctg cttcttgcag tcatggctat tgaccgctat
      361 gctgctatct gccacccact gctctaccca cttctcatga ctccttgtag atgtgaagtt
      421 cttgccagtg ggtcatgggg agtagctcat tgcgtgtctt tgttctatac tttattgctc
      481 tctcagttat attttcaaac caatgaaggg atacctcatt ttttctgtga ttctaggcct
      541 ctcttattac tttcctgctc tgacaatcat ctcaatgagg gcctgatgat gggtttgtct
      601 gcagtaatgg gaatcagtgc acttttctgc attttaagtt cttatgcttc tatttttcat
      661 gctgtggcta gagttccatc agcacagggg aaaaggaaag ccttagccac atgtagttcc
      721 cacttctctg tagtcctcct tttccacagc acagtctttg ccacctacct gaagccccca
      781 tctacttctc actcctctgg ggaggtggta gctgctgttt tgtatacctt ggtaactccc
      841 actctgaacc cgttcattta tagtctgaga aatagggatg ttaagagttc cttgagaagg
      901 atcctgaaca tagagaagtc tcaggactaa
//
