LOCUS       NM_001000386             948 bp    mRNA    linear   ROD 26-OCT-2024
DEFINITION  Rattus norvegicus olfactory receptor family 1 subfamily J member 20
            (Or1j20), mRNA.
ACCESSION   NM_001000386 XM_231218
VERSION     NM_001000386.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 948)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     REVIEWED REFSEQ: This record has been curated by Janet Young and
            Barbara Trask (FHCRC). The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Aug 30, 2004 this sequence version replaced XM_231218.2.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript is intronless :: SRR22582416.641478.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-948               JAXUCZ010000003.1  40815012-40815959
FEATURES             Location/Qualifiers
     source          1..948
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p11"
     gene            1..948
                     /gene="Or1j20"
                     /gene_synonym="Olr415"
                     /note="olfactory receptor family 1 subfamily J member 20"
                     /db_xref="GeneID:296677"
                     /db_xref="RGD:1333209"
     CDS             1..948
                     /gene="Or1j20"
                     /gene_synonym="Olr415"
                     /note="olfactory receptor gene Olr415; olfactory receptor
                     415"
                     /codon_start=1
                     /product="olfactory receptor Olr415"
                     /protein_id="NP_001000386.1"
                     /db_xref="GeneID:296677"
                     /db_xref="RGD:1333209"
                     /translation="MSCIRRNNHSITSEFILLGLPINPELNDMYSALFLAMYLTTVLG
                     NLLIILLIRLDSHLHTPMYFFLSHLAFTDISFSSVTAPKMLVNMLTHSQSISYTGCIS
                     QMYFFLFFGDLDSFLLTSMAYDRYVAICHPLHYTTIMSQSLCVLLLIMCWVLSFASAI
                     LHTLLLTCLSFCGDNTLPHFFCDLSALLKLLSSDTTINELVIFTVGVVIITVPLICIL
                     VSYGYIGATILRTPSTKGIFKALSTCGSHLSVVSLYYGAIIGLYSFPSPKDNNNKDVI
                     VAVMYTVVTPMLNPFIYSLRNRDIKGALRNMLSKRASSQ"
     exon            1..948
                     /gene="Or1j20"
                     /gene_synonym="Olr415"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgagctgca tcagaaggaa taatcatagt atcacatctg agttcatcct cctggggctc
       61 cctatcaatc cagaattgaa tgacatgtac tctgccctct tcctggccat gtacctgacc
      121 acagtgctgg ggaacctgct catcatcctg ctcatcaggc tggactctca tctccacacc
      181 cccatgtact tcttcctcag tcacttggcc ttcacagaca tctctttctc ctcagtcaca
      241 gctccaaaga tgcttgtgaa tatgttgacg cacagtcagt ccatctcata cactgggtgc
      301 atttcccaga tgtatttttt cctatttttt ggagatctcg atagctttct tctgacctcc
      361 atggcctatg acagatatgt agctatctgc caccctctgc actataccac tatcatgagt
      421 cagagccttt gtgtcctact gttaattatg tgctgggtct tgtcctttgc cagtgccatt
      481 ttgcataccc ttctacttac ctgtctctct ttctgtgggg acaatactct gccccacttc
      541 ttctgtgatc tctctgctct gcttaagctg ttgagctcag ataccaccat caatgaactg
      601 gttatcttca ctgtaggagt ggtgatcata actgtgccat tgatatgtat tctggtttct
      661 tatggataca ttggggccac tatcctaaga actccctcca ccaagggaat cttcaaagcc
      721 ttgtccacat gtggctctca cctctctgtg gtttctctgt actatggagc cattattggg
      781 ctatactctt ttccttcacc taaggacaat aataacaagg atgtaattgt ggctgtgatg
      841 tacactgtgg tcacacccat gctgaatccc tttatctaca gtctaaggaa tcgagacata
      901 aaaggagcac tgagaaatat gctcagtaag agagcaagtt cacagtga
//
