LOCUS       NM_001000827             942 bp    mRNA    linear   ROD 26-OCT-2024
DEFINITION  Rattus norvegicus olfactory receptor family 1 subfamily J member 19
            (Or1j19), mRNA.
ACCESSION   NM_001000827
VERSION     NM_001000827.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 942)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     REVIEWED REFSEQ: This record has been curated by Janet Young and
            Barbara Trask (FHCRC). The reference sequence was derived from
            JAXUCZ010000003.1.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-942               JAXUCZ010000003.1  40730573-40731514
FEATURES             Location/Qualifiers
     source          1..942
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p11"
     gene            1..942
                     /gene="Or1j19"
                     /gene_synonym="Olfr348; Olr409"
                     /note="olfactory receptor family 1 subfamily J member 19"
                     /db_xref="GeneID:405116"
                     /db_xref="RGD:1333882"
     CDS             1..942
                     /gene="Or1j19"
                     /gene_synonym="Olfr348; Olr409"
                     /note="olfactory receptor gene Olr409; olfactory receptor
                     348; olfactory receptor 409"
                     /codon_start=1
                     /product="olfactory receptor Olr409"
                     /protein_id="NP_001000827.1"
                     /db_xref="GeneID:405116"
                     /db_xref="RGD:1333882"
                     /translation="MKSTRNQSSAFEFILLGLPIRPEEQGMYYAMFLATYLTTVLGNL
                     LIILLIRLDSHLHTPMYFFLSHLAFTDISFSSVTAPKMLMNMLIHSQSISYAGCISQA
                     YFFLFFADLDSFLLTSMAYDRYVAICHPLHYTRIMSQSVCILLVIASWFLSFAGALVH
                     TLLLARLSFFRGNTLHHFFCDLSTLIKLSSSDTSINELVILVVGSLVITVPFICILVS
                     YGRIGATILRTPSIKGICKALSTCGSHLSVVSLYYGAIIGLYFVPSSNDTNDKDVIVA
                     VMYTMVTPMLNPFIYSLRNRDMKGALRNTFSRATFSM"
     exon            1..942
                     /gene="Or1j19"
                     /gene_synonym="Olfr348; Olr409"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgaagagca caaggaacca gagcagtgca tttgagttca tcctcctggg gctccccatc
       61 cgaccagaag agcaaggcat gtactatgcc atgtttctgg ctacatacct gaccacagtg
      121 ctggggaacc tgctcatcat tctgctcatc agactggatt ctcacctcca cactcccatg
      181 tacttcttcc tcagtcactt ggccttcacg gacatctctt tctcatcagt cacagctcca
      241 aagatgctga tgaatatgtt gatacacagt caatctatct catatgctgg gtgcatttcc
      301 caggcatatt ttttcttatt tttcgcagat cttgacagct ttcttctgac ctccatggcc
      361 tatgacagat atgtggccat ctgccatccc ctccactata ccagaatcat gagtcagagt
      421 gtctgtatct tactagttat tgcatcctgg tttttatctt ttgctggtgc tcttgtgcac
      481 actcttcttc tagctcgtct ctctttcttt agaggtaaca ctctccacca tttcttctgt
      541 gacctgtcta ccttaattaa gctgtctagc tcagatacat ccatcaatga gctggtcatc
      601 cttgttgtag gatcacttgt cattactgtg ccattcatat gcatcctggt ttcatatgga
      661 cgcattggag ccactatcct gagaactccc tccatcaagg gaatctgcaa agccttgtcc
      721 acatgtggct ctcacctctc tgtggtttct ctctattacg gagcaattat tgggctatat
      781 tttgtcccct catcaaatga cactaatgac aaggatgtca ttgtagctgt gatgtacact
      841 atggtcacac ccatgctgaa tccctttatt tacagtctga ggaatcggga tatgaaagga
      901 gctttgagaa atacattttc aagagcgact ttttccatgt aa
//
