LOCUS       NM_001000382             939 bp    mRNA    linear   ROD 26-OCT-2024
DEFINITION  Rattus norvegicus olfactory receptor family 1 subfamily J member 16
            (Or1j16), mRNA.
ACCESSION   NM_001000382 XM_231198
VERSION     NM_001000382.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 939)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     REVIEWED REFSEQ: This record has been curated by Janet Young and
            Barbara Trask (FHCRC). The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Aug 30, 2004 this sequence version replaced XM_231198.2.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-939               JAXUCZ010000003.1  40536052-40536990
FEATURES             Location/Qualifiers
     source          1..939
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p11"
     gene            1..939
                     /gene="Or1j16"
                     /gene_synonym="Olr404; ratchr3-16004548-16005486_ORF"
                     /note="olfactory receptor family 1 subfamily J member 16"
                     /db_xref="GeneID:296667"
                     /db_xref="RGD:1334217"
     CDS             1..939
                     /gene="Or1j16"
                     /gene_synonym="Olr404; ratchr3-16004548-16005486_ORF"
                     /note="olfactory receptor gene Olr404; olfactory receptor
                     404"
                     /codon_start=1
                     /product="olfactory receptor Olr404"
                     /protein_id="NP_001000382.1"
                     /db_xref="GeneID:296667"
                     /db_xref="RGD:1334217"
                     /translation="MRMDNESTVSEFILLGLPIRAEDQGMYFALFLTMYLTTVLGNLL
                     IILLIRLDSHLHNPMYFFLSHLAFTDISFSSVTAPKMLMNMLTHFQSISYAGCIFQVY
                     FFAIFADLDSFLLTSMAYDRYVAICHPLHYSQTMSQSLCVLLVVVSWALSTVNALVHT
                     LLLARLSHFRDNTIPHYFCDLSALLKLSSSDTTINELVILVLGNVVITLPFICILVSY
                     GHIGVTILKTPSIKGICKALSTCGSHLCVVSLYYGAIIGLYFVPSSNNTNDKDAIVAV
                     MYTVVTPMLNPFIYSLRNQDMKGALKHILSGRLCSQ"
     exon            1..939
                     /gene="Or1j16"
                     /gene_synonym="Olr404; ratchr3-16004548-16005486_ORF"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgaggatgg ataatgagag cacagtatct gagttcatcc tcctggggct tcccattcgg
       61 gcagaggacc aaggcatgta ctttgccctg ttcctgacca tgtacctgac aactgtgctg
      121 ggaaacctgc taatcattct gctcatcagg ctggactctc acctccacaa ccccatgtac
      181 ttcttcctca gccacttggc tttcacagac atctctttct catcggtcac agctccaaag
      241 atgctcatga atatgctgac acactttcag tctatctcat atgctgggtg cattttccag
      301 gtatattttt ttgcaatatt tgctgatctt gatagctttc ttctgacttc aatggcctat
      361 gacaggtatg tggctatctg tcaccctctg cactattcac aaactatgag tcagagcctc
      421 tgtgttcttc tagtagttgt atcctgggcc ctatccacag tcaatgcgct ggtacacacc
      481 cttctcttgg ctcgcctatc tcacttcaga gacaatacca tcccccatta cttctgtgac
      541 ctctctgctt tgctgaagct gtccagctca gataccacca ttaatgagct ggtcatcctt
      601 gttttaggta atgtggtcat taccctgcca ttcatatgca ttctggtctc ttatggccac
      661 attggagtca ctattctgaa aactccctca atcaaaggaa tctgcaaagc cttgtccaca
      721 tgtgggtctc acctctgtgt agtttccttg tactatggag ccattattgg gctatatttt
      781 gtcccctcat ctaataacac taatgacaag gatgccattg tggctgtgat gtacactgtg
      841 gttacgccca tgctgaatcc cttcatttat agtctgagga atcaggatat gaaaggagca
      901 ctaaaacata ttcttagcgg gagactgtgt tcacaatga
//
