LOCUS       NM_001000384             939 bp    mRNA    linear   ROD 24-OCT-2024
DEFINITION  Rattus norvegicus olfactory receptor family 1 subfamily J member
            13C (Or1j13c), mRNA.
ACCESSION   NM_001000384 XM_231202
VERSION     NM_001000384.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 939)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     REVIEWED REFSEQ: This record has been curated by Janet Young and
            Barbara Trask (FHCRC). The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Aug 30, 2004 this sequence version replaced XM_231202.2.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-939               JAXUCZ010000003.1  40706051-40706989
FEATURES             Location/Qualifiers
     source          1..939
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p11"
     gene            1..939
                     /gene="Or1j13c"
                     /gene_synonym="Olr408; ratchr3-16175632-16176570_ORF"
                     /note="olfactory receptor family 1 subfamily J member 13C"
                     /db_xref="GeneID:296672"
                     /db_xref="RGD:1333536"
     CDS             1..939
                     /gene="Or1j13c"
                     /gene_synonym="Olr408; ratchr3-16175632-16176570_ORF"
                     /note="olfactory receptor gene Olr408; olfactory receptor
                     408"
                     /codon_start=1
                     /product="olfactory receptor Olr408"
                     /protein_id="NP_001000384.1"
                     /db_xref="GeneID:296672"
                     /db_xref="RGD:1333536"
                     /translation="MTQDNESTVSDFNLLGLPIRAEDQGVYSVLFLIMYLTTVLGNLL
                     IILLIRLDPHLHTPMYFFLSHLALTDISFSSVTAPKMLMNMLTHSQSISYAGCVSQVY
                     FYIAFSDLDSFLLTSMAYDRYVAICHPLHYNTIMSQNLCVLLLVMSWALSSANALVHT
                     LLLARLSHFRNNTISHYFCELSALLKLSSSDTTINKMVILPLGTVVITLPFVLILVSY
                     GCIGVTILKIPSINGIYKTLSTCGSHLCVVSLYYGAIIGLYFVPSSNNTNDQDAIVAV
                     IYTVVTPMLNPFIYSLRNRDMKGALKNILSRRLCSQ"
     exon            1..939
                     /gene="Or1j13c"
                     /gene_synonym="Olr408; ratchr3-16175632-16176570_ORF"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgacacagg ataatgagag cactgtgtct gatttcaacc tcctggggct ccccattcgg
       61 gcagaagacc aaggtgtgta ctctgtcctg ttcctgatca tgtacctgac aactgtactg
      121 gggaacctgc tcatcattct gcttatcagg ctggaccctc acctccacac ccccatgtac
      181 ttcttcctca gccacttggc tctcacagac atatctttct catcagtcac agctccaaag
      241 atgctcatga atatgctgac acacagtcag tccatctcat atgctgggtg tgtttcccag
      301 gtatattttt acatagcttt tagtgatctt gacagctttc ttttgacttc catggcctat
      361 gataggtatg tggctatctg ccaccctctg cactataaca ccatcatgag tcagaacctc
      421 tgtgttcttc tattagttat gtcctgggcc ttatcttctg ctaatgctct tgtacacacc
      481 cttctcttag ctcgcctatc tcactttaga aacaatacca tctcccacta tttctgtgaa
      541 ctctctgcgt tgctgaagct gtccagttca gacaccacca tcaataagat ggtcatcctg
      601 cctttaggta ctgtagtcat taccttacca tttgtattaa ttctggtctc ttatggctgc
      661 ataggagtca caattctgaa aattccctct atcaatggaa tctacaaaac cttgtccacg
      721 tgtggctctc atctctgtgt ggtttctttg tactatgggg ccatcattgg actatatttt
      781 gtcccctcat ctaataacac taatgaccag gatgccattg ttgctgtgat atatactgtg
      841 gtcacaccaa tgttgaatcc ctttatttat agtctcagga atcgggatat gaaaggagca
      901 ctgaaaaata tcctcagcag gagactgtgt tcacagtga
//
