LOCUS       NM_001000889             972 bp    mRNA    linear   ROD 24-OCT-2024
DEFINITION  Rattus norvegicus olfactory receptor family 14 subfamily J member
            5C (Or14j5c), mRNA.
ACCESSION   NM_001000889
VERSION     NM_001000889.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 972)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     REVIEWED REFSEQ: This record has been curated by Janet Young and
            Barbara Trask (FHCRC). The reference sequence was derived from
            JAXUCZ010000020.1.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-972               JAXUCZ010000020.1  617428-618399       c
FEATURES             Location/Qualifiers
     source          1..972
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..972
                     /gene="Or14j5c"
                     /gene_synonym="Olr1689"
                     /note="olfactory receptor family 14 subfamily J member 5C"
                     /db_xref="GeneID:405190"
                     /db_xref="RGD:1333506"
     CDS             1..972
                     /gene="Or14j5c"
                     /gene_synonym="Olr1689"
                     /note="olfactory receptor gene Olr1689; olfactory receptor
                     14J1-like; olfactory receptor 1689"
                     /codon_start=1
                     /product="olfactory receptor Olr1689"
                     /protein_id="NP_001000889.1"
                     /db_xref="GeneID:405190"
                     /db_xref="RGD:1333506"
                     /translation="MTARNITTMSGFLLKGFTDNHELQVLQALLFLVMYLLGSAGNFI
                     IITITTLDPQLQSPMYYFLRHLSILDLSSLSVTVPQYVDSSLARSGYISYDQCMMQVF
                     FFTAFAWTEMAILTAMSYDRYVAICLPLHYEVIMSSRKCTWAVAAVWLSGSLTGTLYT
                     ASTLSIRFCGDKIIHQFFCDVPQLLKISCSNDYSGVLEVSTFVTVLAFACFVGIAFSY
                     GQIFSTVLRIPSAEGRSKVFSTCLPHICVVSFFLSTGICAYLKPTSDSPTALDLILSI
                     FYTVLPPTLNPVIYSLRNASLKGAVKKLLFREKFIGKNYFSSVVHAY"
     exon            1..972
                     /gene="Or14j5c"
                     /gene_synonym="Olr1689"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgactgcca gaaacataac cacaatgagt ggatttctcc tcaaggggtt cactgacaac
       61 catgagctgc aggtcttaca ggctttgctc ttcttggtga tgtacctatt gggttcagca
      121 ggtaacttca tcattatcac catcacaaca ctggatccac aactccagtc tccaatgtat
      181 tactttctga ggcacctttc cattctggac ctctcatctc tctctgtcac agttcctcag
      241 tatgttgaca gttccctggc acgaagtggc tacatttcat atgaccagtg catgatgcag
      301 gtttttttct tcacagcttt tgcctggact gagatggcta ttctcacagc aatgtcttat
      361 gaccgctatg tggccatctg cctcccactg cactatgagg ttatcatgag ttccagaaag
      421 tgcacttggg ctgtggcagc tgtgtggcta agtggaagcc tcacaggaac attatacaca
      481 gcaagtacac tctctatcag attctgtggg gacaaaataa ttcaccagtt cttctgtgat
      541 gtcccccagt tgctcaagat ctcttgttct aatgactatt ctggggtact ggaagtgtct
      601 actttcgtga ctgtattagc ctttgcctgc ttcgtgggca ttgccttctc ctatggccag
      661 atattctcta cagttctcag gattccctct gcagaaggtc gatctaaggt cttctctacc
      721 tgcctgcccc atatctgtgt tgtttcattt tttctctcaa caggcatttg tgcctatcta
      781 aagccaacct cagactcacc aactgcttta gacctcatac tctctatttt ttacactgta
      841 ctacccccaa ccctcaaccc tgttatctat agtctaagaa atgcatcctt gaagggagct
      901 gtaaagaagt tactgttcag ggagaaattc attgggaaaa attatttttc ttctgttgtt
      961 catgcctact aa
//
