LOCUS       NM_001000477             939 bp    mRNA    linear   ROD 24-OCT-2024
DEFINITION  Rattus norvegicus olfactory receptor family 10 subfamily D member
            5B (Or10d5b), mRNA.
ACCESSION   NM_001000477 XM_236166
VERSION     NM_001000477.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 939)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 939)
  AUTHORS   Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M.,
            Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C.,
            Burch,P.E., Okwuonu,G., Hines,S., Lewis,L., DeRamo,C., Delgado,O.,
            Dugan-Rocha,S., Miner,G., Morgan,M., Hawes,A., Gill,R., Celera,
            Holt,R.A., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
            Barnstead,M., Chin,S., Evans,C.A., Ferriera,S., Fosler,C.,
            Glodek,A., Gu,Z., Jennings,D., Kraft,C.L., Nguyen,T.,
            Pfannkoch,C.M., Sitter,C., Sutton,G.G., Venter,J.C., Woodage,T.,
            Smith,D., Lee,H.M., Gustafson,E., Cahill,P., Kana,A.,
            Doucette-Stamm,L., Weinstock,K., Fechtel,K., Weiss,R.B., Dunn,D.M.,
            Green,E.D., Blakesley,R.W., Bouffard,G.G., De Jong,P.J.,
            Osoegawa,K., Zhu,B., Marra,M., Schein,J., Bosdet,I., Fjell,C.,
            Jones,S., Krzywinski,M., Mathewson,C., Siddiqui,A., Wye,N.,
            McPherson,J., Zhao,S., Fraser,C.M., Shetty,J., Shatsman,S.,
            Geer,K., Chen,Y., Abramzon,S., Nierman,W.C., Havlak,P.H., Chen,R.,
            Durbin,K.J., Simons,R., Ren,Y., Song,X.Z., Li,B., Liu,Y., Qin,X.,
            Cawley,S., Worley,K.C., Cooney,A.J., D'Souza,L.M., Martin,K.,
            Wu,J.Q., Gonzalez-Garay,M.L., Jackson,A.R., Kalafus,K.J.,
            McLeod,M.P., Milosavljevic,A., Virk,D., Volkov,A., Wheeler,D.A.,
            Zhang,Z., Bailey,J.A., Eichler,E.E., Tuzun,E., Birney,E.,
            Mongin,E., Ureta-Vidal,A., Woodwark,C., Zdobnov,E., Bork,P.,
            Suyama,M., Torrents,D., Alexandersson,M., Trask,B.J., Young,J.M.,
            Huang,H., Wang,H., Xing,H., Daniels,S., Gietzen,D., Schmidt,J.,
            Stevens,K., Vitt,U., Wingrove,J., Camara,F., Mar Alba,M.,
            Abril,J.F., Guigo,R., Smit,A., Dubchak,I., Rubin,E.M., Couronne,O.,
            Poliakov,A., Hubner,N., Ganten,D., Goesele,C., Hummel,O.,
            Kreitler,T., Lee,Y.A., Monti,J., Schulz,H., Zimdahl,H.,
            Himmelbauer,H., Lehrach,H., Jacob,H.J., Bromberg,S.,
            Gullings-Handley,J., Jensen-Seaman,M.I., Kwitek,A.E., Lazar,J.,
            Pasko,D., Tonellato,P.J., Twigger,S., Ponting,C.P., Duarte,J.M.,
            Rice,S., Goodstadt,L., Beatson,S.A., Emes,R.D., Winter,E.E.,
            Webber,C., Brandt,P., Nyakatura,G., Adetobi,M., Chiaromonte,F.,
            Elnitski,L., Eswara,P., Hardison,R.C., Hou,M., Kolbe,D., Makova,K.,
            Miller,W., Nekrutenko,A., Riemer,C., Schwartz,S., Taylor,J.,
            Yang,S., Zhang,Y., Lindpaintner,K., Andrews,T.D., Caccamo,M.,
            Clamp,M., Clarke,L., Curwen,V., Durbin,R., Eyras,E., Searle,S.M.,
            Cooper,G.M., Batzoglou,S., Brudno,M., Sidow,A., Stone,E.A.,
            Venter,J.C., Payseur,B.A., Bourque,G., Lopez-Otin,C., Puente,X.S.,
            Chakrabarti,K., Chatterji,S., Dewey,C., Pachter,L., Bray,N.,
            Yap,V.B., Caspi,A., Tesler,G., Pevzner,P.A., Haussler,D.,
            Roskin,K.M., Baertsch,R., Clawson,H., Furey,T.S., Hinrichs,A.S.,
            Karolchik,D., Kent,W.J., Rosenbloom,K.R., Trumbower,H.,
            Weirauch,M., Cooper,D.N., Stenson,P.D., Ma,B., Brent,M.,
            Arumugam,M., Shteynberg,D., Copley,R.R., Taylor,M.S., Riethman,H.,
            Mudunuri,U., Peterson,J., Guyer,M., Felsenfeld,A., Old,S.,
            Mockrin,S. and Collins,F.
  CONSRTM   Rat Genome Sequencing Project Consortium
  TITLE     Genome sequence of the Brown Norway rat yields insights into
            mammalian evolution
  JOURNAL   Nature 428 (6982), 493-521 (2004)
   PUBMED   15057822
COMMENT     REVIEWED REFSEQ: This record has been curated by Janet Young and
            Barbara Trask (FHCRC). The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Aug 30, 2004 this sequence version replaced XM_236166.2.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-939               JAXUCZ010000008.1  49216813-49217751   c
FEATURES             Location/Qualifiers
     source          1..939
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q22"
     gene            1..939
                     /gene="Or10d5b"
                     /gene_synonym="Olr1332; ratchr8-42915934-42914996_ORF"
                     /note="olfactory receptor family 10 subfamily D member 5B"
                     /db_xref="GeneID:300632"
                     /db_xref="RGD:1333134"
     CDS             1..939
                     /gene="Or10d5b"
                     /gene_synonym="Olr1332; ratchr8-42915934-42914996_ORF"
                     /note="olfactory receptor gene Olr1332; olfactory receptor
                     1332"
                     /codon_start=1
                     /product="olfactory receptor Olr1332"
                     /protein_id="NP_001000477.1"
                     /db_xref="GeneID:300632"
                     /db_xref="RGD:1333134"
                     /translation="MRNDTSVTEFILLGISNSEGLESMLFILFLVFYVFALLGNLLIF
                     LTILASPNLHTPMYFFLGNLAVFDIFFPSVNSPKMMDSLVGQSRTISYQGCASQVFFY
                     HTLGGTECFLYTLMAYDRFVAICHPMRYTIIMNHRVCTCLTVGTWVGGFVHGSILTFL
                     IFKLPYCGPNEVDSFFCDIPVVLSLACADTSLARTVSFTNVGVIALTCFLLILTSYTR
                     IVISILQIHSSEGRHRAFSTCSAHLTSIILVYGPVILVYLRPASSPWLDSVVQVFNNV
                     VTPSLNPLIYTLRNKDVKLALKKALSQEAQPLGYKE"
     exon            1..939
                     /gene="Or10d5b"
                     /gene_synonym="Olr1332; ratchr8-42915934-42914996_ORF"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgagaaacg acacctctgt gacagagttc attttgctgg gaatttctaa cagtgaagga
       61 ctagagagca tgctgttcat cttgttcctg gtcttctatg tctttgcctt gctggggaac
      121 ctgctcatct tcctcaccat cctggcatct cctaacctcc acacccccat gtatttcttc
      181 ctggggaacc tggcagtgtt tgacattttc ttcccttctg tgaattctcc taagatgatg
      241 gactccctag tggggcagag ccgcaccatc tcataccagg gatgcgcctc ccaggtcttc
      301 ttctatcaca ctctgggtgg cacagaatgt ttcctgtata cactgatggc ctatgaccgc
      361 tttgtagcta tttgtcaccc tatgagatac acaatcatca tgaatcacag ggtgtgtacc
      421 tgtctcacag tgggcacttg ggtgggaggt tttgtccatg ggagcatcct cacttttctt
      481 atctttaagt tgccctactg tggacccaat gaggtagaca gtttcttctg tgacattcct
      541 gtggtgctgt ccctggcatg tgcagacacc tccctagcac ggactgtgag ttttaccaat
      601 gttggtgtca ttgcgctcac ctgttttctt ctcattctca cttcttacac tcgtattgtg
      661 atctccatcc tgcaaatcca ttcctcagaa ggcagacaca gagccttctc cacctgcagt
      721 gcccacctga catctatcat cttggtctat ggccctgtga ttcttgtcta tcttagacct
      781 gcttctagtc cctggctgga ttctgttgtc caggtgttta acaatgttgt caccccctct
      841 ttgaatcctc tgatttacac cctgaggaac aaggatgtga aattagctct gaagaaggcg
      901 ctatctcaag aggcccagcc tttggggtat aaggaatag
//
